Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g01485 ATGGCTGCATCGTCTTCCTCAGCATCGCAATCGCATTTCACCTATTCCAACGCCCCTACCTACTTCCCCGTTCCTTTCCACCTCCAGCAATCCGCCGCCACACCGGCGAATTACGCCGCTGCGGTGTACGCTGCGGCTCCGGCAGTACAAATCCCTTCGCTTCCGGTCATCGGCCCTGTCTCTCCGGCTCCGGTTTCTGGCGTGTACTCCTTACCGCAATATCCGTCGCAGCAGTTGTTTGAGAGGGATGCGCAGATAATAACGCCGGAGGCGCTGGAGAGCGTGAAGGCGGCGATTGCGAGCAGCGAGGCGGAGAACAAGGCGCAGGCGAAGAAGAAAGCAGTTCCTCGAAAAGCTGCTGGTCAAACATGGGAGGATCCTATTCTTGCTGAGTGGCCCGAAGATGATTATCGGCTCTTTTGTGGTGACCTTGGTAATGAAGTGAATGACGATGTTCTTACCAAAGCATTTTCACGTTTCCCTTCCTTTAGCATGGCACGGGTTGTCAGAGATAAACGGACTGGGAAAACAAAGGGCTATGGTTTTGTAAGCTTTGCCAGTCCTTCTGACCTTGCTGCTGCTCTTAAAGAAATGAATGGTAAATATGTTGGAAATCGGCCGATAAAATTAAGCAAGAGTAAGTGGAAGGAGAGAACAGATTTCGAGGCCCTGGAAAAACAGAAGCGCCAAACTCATAAGAAACCGAAGCTTCCCAGGAAGGGTGTTCTTCACAAGTGA 738 0.5163 MAASSSSASQSHFTYSNAPTYFPVPFHLQQSAATPANYAAAVYAAAPAVQIPSLPVIGPVSPAPVSGVYSLPQYPSQQLFERDAQIITPEALESVKAAIASSEAENKAQAKKKAVPRKAAGQTWEDPILAEWPEDDYRLFCGDLGNEVNDDVLTKAFSRFPSFSMARVVRDKRTGKTKGYGFVSFASPSDLAAALKEMNGKYVGNRPIKLSKSKWKERTDFEALEKQKRQTHKKPKLPRKGVLHK 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g01485 245 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 33 245 - -
Adu09g01485 245 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 215 IPR000504 GO:0003723
Adu09g01485 245 SUPERFAMILY RNA-binding domain, RBD 121 217 IPR035979 GO:0003676
Adu09g01485 245 MobiDBLite consensus disorder prediction 221 245 - -
Adu09g01485 245 MobiDBLite consensus disorder prediction 230 245 - -
Adu09g01485 245 SMART rrm1_1 138 211 IPR000504 GO:0003723
Adu09g01485 245 Gene3D - 85 234 IPR012677 -
Adu09g01485 245 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 209 IPR000504 GO:0003723
Adu09g01485 245 PANTHER RNA-BINDING PROTEIN 42-LIKE 33 245 - -
Adu09g01485 245 CDD RRM_RBM42 131 213 IPR034215 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g01485 Adu-Chr9 49207004 49210520 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g01485 135 229 Eukaryotic Initiation Factors Gene Family AT2G23350 35.052 8.11e-12 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g01485 K25079 - gmx:100807693 384.415