Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g01288 ATGTCAAACATAACAAGTTGTGATAGTGGGAGCTTCTCAACAGAGAACACAGTTCCATTATTAGAAGATGCAGTGGTGAAACAACAATCTTCAGAGATTCTTGGTGGTAGGTTCCATCATAGTCCACATTCTCATACTTCAACAACAACAACCAATAATAACAATAATAATACCAATGCTTCCAACACAAATTCTCAACCTCCTCCTCCACCTCCTAAGAAGAAGAGGAACCTACCGGGAAATCCAGATCCCAGTGCTGAAGTGATAGCTCTATCACCAACAACACTAATGGCCACAAACCGCTTCATATGCGAAATATGCAACAAAGGGTTTCAAAGAGACCAGAACCTTCAACTTCATCGGCGAGGACACAACCTGCCGTGGAAGCTGAAGCAGCGAACGAGTGCGGAGGTGAGAAAGAGAGTATATGTGTATCCTGAGTCCTCGTGTGTTCACCACAACCCCGCGAGAGCGTTGGGTGACCTCACGGGAATCAAGAAACACTTTTGTAGGAAGCATGGTGAGAAAAAGTGGAAATGTGATAAGTGCTCAAAGAAATATGCTGTTCAATCTGACTGGAAGGCACATTCCAAAATATGCGGTACAAGGGAGTACAAATGTGACTGTGGCACCATCTTTTCCAGAAGAGATAGCTTCATCACCCACAGAGCATTCTGCGACGCACTTGCAGAAGAGAACAACAACAAGAAGAACGAAGGATCATTATTCCCAAACATACCTTCAAATCTCCAATCCCAACCACAAATCCCAAACCTCCTTCTTCCCTCTCTACCAATCAACACCACCCCCACCACTCTTTCTTCATCCTCCTCACTCCCTCTTCACCACGACCTCATCATTCCAAATCCCTCCTTCAACAACATACCCTTCCCGAGAAACCCCAACACCACCACCACCACCACCACCACCACTACTTCACATCCTTCTCTTCAACTCACCTCAACCATCTTCGATGACAACGCCCTCCACTTAACTGCGTCGTCGTCATCACTGTCCTCGCCGCACATGTCAGCCACCGCGCTGCTTCAGAAAGCAGCGCAAATGGGTGCAACCGTCAGCAGCAGCAACAACAACAACAACATGGTAGTGGAGAATAGCAACAAGGGTGGCGGTTATGTAACCGCCACAACAAGTATGGCGCCGCCATCGTTTAGCGGAGTAGCTCCAATGCAACAGAATGTGAATAACAATAATAACAGTTTGTTCATGAACCAGTTCATGCAACAAGACATGGCTACTACTCCTCATCATTATGGTAATTTGATGTGTGGAATGAACGGTGTGGATATGTTCAACGCTATATTGGACCAAAGCAAGGCACTGTCCAAGATCATTGACCACAGTAACCACCACCGCGAAAGTGCGGTGGCGAAAAGGGAGTGTACTAAGGGTGGAAGTATCGGTGGTAATAGTGATGTGATGACGTTGGACTTGTTGGGAATTGGAGGAGGCGGCGGCGGTGGACATAATGGAAGTGGTGGTTTCTATGGCGGTGGTAATAATAATAATAACCAGCAACAAGGAGATAATAATGGTGCAGCAAGTGTAAGAGACGAGGTTTGGAATTGGTCAACGAAGAACGCAGGTTTTGAATCCTTCTCAGCAACAAGCAGCATTTGA 1641 0.4631 MSNITSCDSGSFSTENTVPLLEDAVVKQQSSEILGGRFHHSPHSHTSTTTTNNNNNNTNASNTNSQPPPPPPKKKRNLPGNPDPSAEVIALSPTTLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLKQRTSAEVRKRVYVYPESSCVHHNPARALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNNKKNEGSLFPNIPSNLQSQPQIPNLLLPSLPINTTPTTLSSSSSLPLHHDLIIPNPSFNNIPFPRNPNTTTTTTTTTTSHPSLQLTSTIFDDNALHLTASSSSLSSPHMSATALLQKAAQMGATVSSSNNNNNMVVENSNKGGGYVTATTSMAPPSFSGVAPMQQNVNNNNNSLFMNQFMQQDMATTPHHYGNLMCGMNGVDMFNAILDQSKALSKIIDHSNHHRESAVAKRECTKGGSIGGNSDVMTLDLLGIGGGGGGGHNGSGGFYGGGNNNNNQQQGDNNGAASVRDEVWNWSTKNAGFESFSATSSI 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g01288 546 SMART c2h2final6 102 124 IPR013087 -
Adu09g01288 546 SMART c2h2final6 178 198 IPR013087 -
Adu09g01288 546 MobiDBLite consensus disorder prediction 296 314 - -
Adu09g01288 546 Gene3D Classic Zinc Finger 81 153 - -
Adu09g01288 546 ProSiteProfiles Zinc finger C2H2 type domain profile. 102 124 IPR013087 -
Adu09g01288 546 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 47 491 - -
Adu09g01288 546 SUPERFAMILY beta-beta-alpha zinc fingers 101 198 IPR036236 -
Adu09g01288 546 MobiDBLite consensus disorder prediction 292 314 - -
Adu09g01288 546 MobiDBLite consensus disorder prediction 41 63 - -
Adu09g01288 546 MobiDBLite consensus disorder prediction 64 78 - -
Adu09g01288 546 MobiDBLite consensus disorder prediction 502 519 - -
Adu09g01288 546 MobiDBLite consensus disorder prediction 499 519 - -
Adu09g01288 546 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 47 491 - -
Adu09g01288 546 ProSitePatterns Zinc finger C2H2 type domain signature. 104 124 IPR013087 -
Adu09g01288 546 MobiDBLite consensus disorder prediction 36 86 - -
Adu09g01288 546 Pfam Zinc-finger double-stranded RNA-binding 102 124 IPR022755 -
Adu09g01288 546 Gene3D Classic Zinc Finger 157 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g01288 Adu-Chr9 31393052 31398998 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g01288 49 360 IDZ Gene Family AT3G50700 55.172 1.69e-115 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu09g01288 zf-C2H2_jaz 8.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g01288 - - adu:107465334 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu06g00409 06 4916839 4920261 Adu09g01288 09 31393052 31398998 ECH
Adu09g01288 09 31393052 31398998 Adu09g01288 09 31393052 31398998 ECH
Adu06g00409 06 4916839 4920261 Adu09g01288 09 31393052 31398998 PCT