Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g01277 ATGGGTGCCAGTAACTTATCCTTCGACCAAGTGCTTGTGGAAATGCTTGAAATGGGTTTTGAGTATTCCAGCATTGTAGAAGCCATTAAAACAGTGGGTTTGTCTATTCCCAATGTTGTGGAGCATATCTTGACGGCTGGTAGTGGTAGTGGTAGAGCTACAACCAGCTCCAAAGCTTCCACTACCACCATACAGCCTTCGAAATTTCGTGCTCCTCATGGAAAAGCACTCAAGAGAAAAGCTTTGTCCTCGACCAGCCAAGTTCGGCAGTCGAGCATATTAGACCATTTTCATACCAATGATAAGTCCACTGTGTGCAATAAGATACATGATGTGGCAATTGTTGATCTAGAAATGGTGAATGAGCACGATGAGCCTATCTCTGAAATGCCTGATGATGTGACCGTGATGCCGGGGCAAATTGTAACTGCTCCAATGGAAAATTTCGTTGTTATGTCTGATTGGGAGACGAGAGTTGGTGGTCTCTTACAGAAGCATTTTGGGATTTTGTGTTTGAAGAGTTTTCAGAAGGAAGCGCTGAACGCATGGGCAGCTCATAAGGACTGCCTTGTCCTTGCTGCAACAGGATCTGGGAAATCATTGTGCTTTCAGGTTCCTGCATTGTTAACTGGGAAAGTGGTGGTTGTGATATCCCCATTAATAAGCTTGATGCATGATCAATGCTTAAAGCTAGCAAGACATGGAGTCAGCGCTTGCTTTCTTGGGTCTGGGCAACCTGACAATACTGTTGAAAAGAAAGCAATGAGAGGCATGTACAGCATAATATATGTTTGTCCAGAGACTGTCCTAAGATTAATACAACCACTGCAGAAGCTTGCAGAAAGTCGTGGTATTGCATTGTTCGCAATTGATGAGGTGCATTGTGTTTCTAAATGGGGTCATGATTTCCGTCCAGACTATAGCCGATTATCTGTGCTGAGGGAAAATTTCAGTACCAGCAAACTTAAATTCCTGGAATTTGACATACCTTTGATGGCCTTGACAGCTACAGCTACACACAGAGTTCAAGAAGATATTTTAAAATCATTACGCATGTCAAAGGAAACAATTTTTGTGCTTACATCTTTTTTTCGATCTAATTTACGCTTCATGGTAAAGCACAGTGGAACTTCACAAGCCTTTTATGAGAAAGATTTTCATGAATTGATCAAAGTATATGGTAGCAAGCTAAATTCCAATAAAAATAAAAAGGCTTTCATCTCAAAGGACTCGGATGATGTTTCCAGCAGCTCTGGTGCTGCTGGAATCTCTGATAATGATGATGTTTCTCCTTATGATGTGGATAACAACCATGATGATTATGGTGGCAGAGACGTTAATGTAGTACACTCAGGAAACACAGACAATCTTGTAAAGGGAAAAGAGTTGTCTGTCGAGTTTCTGGAAAATGACAACGATGACTGTCAAAGCGTGGATGACTGGGATGTTACCTGTGGTGAATTTTGTTCTCAATATCGTCCGAAGGACTGGGAGTTATCTGAGATACATGATCCACCCAAGGAACCAGAAGGAAGTCTGAAAGTACTTAAAGGTCCTTTGGAGCAAGGACTGGCAATCATATATGTACCAACGAGAAAAGAAACGCTGAAAATTGCAAAGTATCTATGCAAGTTTGGCGTGAAGGCTGCTGCCTATAATGCAGCGCTGCCCAAATCACATCTAAGAAGGGTTCACAAAGAATTTCATGAAAATACCATAGAGGTTGTTGTTGCAACAATAGCATTTGGCATGGGGATTGACAAGCCAAATGTCAGAAGAATCATCCACTATGGTTGGCCACAGAGTTTGGAAGCCTACTACCAAGAAGCTGGTCGGGCTGGTCGAGATGGGAAATTAGCAGACTGCATTCTATTTGCAAACCTAGCGAGAGTTCCATCACTTTTGCCTAGTCGAAGAAGTGAAGATCAGACAAAACAAGCATATATCATGTTGTCTGACTGTTTCAGATACGGAATGAACACGTCATGCTGTCGAGCAAAGACACTTGTGGAATACTTTGGAGAGGAATTCAGTCATAGAAAATGTCTCTTATGTGATGTGTGTGTTGATGGACCGCCTCAAAGGCAGAATATGAAAGACGAGGCGTGTATATTACTACAAACTATTGCTGCTAGTCATGCATGTAGTTATTCCATGGATTTTTCATATGATGATGATGTACATCTTGAATATGGATATGGAAGACGTGGAGAGAGGTCATGTCTTAAGAATATTGTCGGAAAGATACGGGAGCAGTCTCAAAAGTTTCTAAACACTGATATATTATTGTGGAGAGGTCTCTCTCGGATTTTGGAAGCTAAAGGATACATCAGGGAGGGAGATGACAAGACCCATGTTCAGATAAAATTTCCGGAGCCAACAAAATTGGGATTGGAATTTATCAGGTCCATGAGTGAAGAAGCTTTCTATGTTTACCCAGAGGCAGATATGTTGCTTGCAGCAAAAACTCACAAACCGCATTCCTCATTACCATACTCCTCATTCTCTGAATGGGGTAAAGGTTGGGCTGATCCTGAGATCCGTCGCCAGCGTCTGGAAAGAATGCAAGTCAATAAAAAGCCAGAGACGCTGAGAAGTCCCAGGAAACGTCGAAAGAGAAAAGCCAATAAAATGAAACACGATATGAGGACTTCTCGAGGAAGACTTGAAGCAAAACTCACAAAATATAAGTGA 2694 0.4183 MGASNLSFDQVLVEMLEMGFEYSSIVEAIKTVGLSIPNVVEHILTAGSGSGRATTSSKASTTTIQPSKFRAPHGKALKRKALSSTSQVRQSSILDHFHTNDKSTVCNKIHDVAIVDLEMVNEHDEPISEMPDDVTVMPGQIVTAPMENFVVMSDWETRVGGLLQKHFGILCLKSFQKEALNAWAAHKDCLVLAATGSGKSLCFQVPALLTGKVVVVISPLISLMHDQCLKLARHGVSACFLGSGQPDNTVEKKAMRGMYSIIYVCPETVLRLIQPLQKLAESRGIALFAIDEVHCVSKWGHDFRPDYSRLSVLRENFSTSKLKFLEFDIPLMALTATATHRVQEDILKSLRMSKETIFVLTSFFRSNLRFMVKHSGTSQAFYEKDFHELIKVYGSKLNSNKNKKAFISKDSDDVSSSSGAAGISDNDDVSPYDVDNNHDDYGGRDVNVVHSGNTDNLVKGKELSVEFLENDNDDCQSVDDWDVTCGEFCSQYRPKDWELSEIHDPPKEPEGSLKVLKGPLEQGLAIIYVPTRKETLKIAKYLCKFGVKAAAYNAALPKSHLRRVHKEFHENTIEVVVATIAFGMGIDKPNVRRIIHYGWPQSLEAYYQEAGRAGRDGKLADCILFANLARVPSLLPSRRSEDQTKQAYIMLSDCFRYGMNTSCCRAKTLVEYFGEEFSHRKCLLCDVCVDGPPQRQNMKDEACILLQTIAASHACSYSMDFSYDDDVHLEYGYGRRGERSCLKNIVGKIREQSQKFLNTDILLWRGLSRILEAKGYIREGDDKTHVQIKFPEPTKLGLEFIRSMSEEAFYVYPEADMLLAAKTHKPHSSLPYSSFSEWGKGWADPEIRRQRLERMQVNKKPETLRSPRKRRKRKANKMKHDMRTSRGRLEAKLTKYK 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g01277 897 Pfam DEAD/DEAH box helicase 175 343 IPR011545 GO:0003676|GO:0005524
Adu09g01277 897 Gene3D - 141 363 IPR027417 -
Adu09g01277 897 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 886 - -
Adu09g01277 897 MobiDBLite consensus disorder prediction 882 897 - -
Adu09g01277 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 211 628 IPR027417 -
Adu09g01277 897 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 162 377 IPR004589 GO:0004386|GO:0006310
Adu09g01277 897 SMART ultradead3 168 373 IPR014001 -
Adu09g01277 897 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 512 670 IPR001650 -
Adu09g01277 897 Gene3D - 630 808 IPR036388 -
Adu09g01277 897 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 7 46 IPR015940 -
Adu09g01277 897 Pfam RecQ zinc-binding 638 688 IPR032284 -
Adu09g01277 897 Pfam Helicase conserved C-terminal domain 516 616 IPR001650 -
Adu09g01277 897 MobiDBLite consensus disorder prediction 864 881 - -
Adu09g01277 897 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 137 236 IPR027417 -
Adu09g01277 897 CDD DEXHc_RecQ 163 363 - -
Adu09g01277 897 MobiDBLite consensus disorder prediction 408 441 - -
Adu09g01277 897 PANTHER ATP-DEPENDENT DNA HELICASE Q-LIKE SIM 4 886 - -
Adu09g01277 897 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 180 356 IPR014001 -
Adu09g01277 897 Gene3D - 500 625 IPR027417 -
Adu09g01277 897 SMART helicmild6 536 617 IPR001650 -
Adu09g01277 897 MobiDBLite consensus disorder prediction 852 897 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g01277 Adu-Chr9 30909427 30915904 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g01277 508 626 Eukaryotic Initiation Factors Gene Family AT5G11170 26.891 2.14e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g01277 K10900 - gmx:100793222 1194.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu09g01277 09 30909427 30915904 Adu09g01277 09 30909427 30915904 ECH