Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g01105 ATGACGACTCGAATAGCGCCTGGTGTTGGCGCCAACTTGCTTGGCCAACACTCTGCCGAGAGGAATCAGGACGCCACCGCCTATGTCGGCAATCTGGACCCCCAAGTTCCTGAGGAGTTGCTCTGGGAGCTTTTCGTTCAGGCTGGCCCTGTCGTTAATGTCTATGTTCCCAAGGACAGAGTCACTAACCAGCACCAGGGATATGGATTTGTTGAATTCCGTAGTGAAGAAGATGCTGACTATGCCATCAAGGTGCTTAATATGATTAAACTTTACGGCAAGCCAATTCGTGTAAATAAGGCAACCCAAGATAAAAAGAGCTTGGATGTGGGGGCAAACCTTTTCATTGGCAACCTTGATCCTGATGTAGATGAGAAGCTCTTGTATGATACTTTCAGTGCATTTGGAGTTATTGTTACTAATCCAAAGATTATGAGAGATCCTGATACCGGAAATTCCCGTGGTTTTGGCTTCATTAGCTATGATTCATTTGAGGCATCTGATTCAGCTATTGAGGCAATGAATGGGCAATATCTTTGCAATCGCCAAATTACAGTGTCATATGCTTACAAAAAAGACACTAAAGGAGAACGGCATGGCACGCCAGCAGAAAGAGTTTTGGCTGCAAGCAATCCCACTGCACAGAAGAGTAGGCCTCATACGAGATTCGCCAGTGCACCTCCAACACTCGCCAATGTTGCTCAGGCTAATGGTACCGTTGCTGTTCCAGTGCCTCCTCACCCCTTTGCTAATGGAGTTGCTCCACCTCCCATTCCTGCCCTCCGACCACCACCACCCCCACCTCAGGCAGCAGCATTTCAGCCAATGCCAGGAGCTGGGCAACCAGCATGGCATCAACAGCAGCCTGGACTCCCACCTGGAATGCCCCCACCTCAGGTCCAGCAGTTCCGGCCACCTCCATCTGGTATGCCAATGCCGCCACCTCCACAAGCT 954 0.5 MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVPEELLWELFVQAGPVVNVYVPKDRVTNQHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKATQDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAFGVIVTNPKIMRDPDTGNSRGFGFISYDSFEASDSAIEAMNGQYLCNRQITVSYAYKKDTKGERHGTPAERVLAASNPTAQKSRPHTRFASAPPTLANVAQANGTVAVPVPPHPFANGVAPPPIPALRPPPPPPQAAAFQPMPGAGQPAWHQQQPGLPPGMPPPQVQQFRPPPSGMPMPPPPQA 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g01105 318 MobiDBLite consensus disorder prediction 193 224 - -
Adu09g01105 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 97 IPR000504 GO:0003723
Adu09g01105 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 184 IPR000504 GO:0003723
Adu09g01105 318 CDD RRM2_SF3B4 111 193 IPR034159 -
Adu09g01105 318 Gene3D - 16 111 IPR012677 -
Adu09g01105 318 CDD RRM1_SF3B4 28 100 IPR034158 -
Adu09g01105 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Adu09g01105 318 PANTHER TRANSFORMER-2-RELATED 1 316 - -
Adu09g01105 318 MobiDBLite consensus disorder prediction 253 318 - -
Adu09g01105 318 SUPERFAMILY RNA-binding domain, RBD 25 195 IPR035979 GO:0003676
Adu09g01105 318 MobiDBLite consensus disorder prediction 253 273 - -
Adu09g01105 318 Gene3D - 112 200 IPR012677 -
Adu09g01105 318 SMART rrm1_1 26 99 IPR000504 GO:0003723
Adu09g01105 318 SMART rrm1_1 113 187 IPR000504 GO:0003723
Adu09g01105 318 PANTHER SPLICING FACTOR 3B SUBUNIT 4 1 316 - -
Adu09g01105 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 103 IPR000504 GO:0003723
Adu09g01105 318 MobiDBLite consensus disorder prediction 208 224 - -
Adu09g01105 318 MobiDBLite consensus disorder prediction 289 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g01105 Adu-Chr9 21260054 21263592 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g01105 18 198 Eukaryotic Initiation Factors Gene Family AT4G34110 28.788 6.64e-19 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g01105 K12831 - gmx:100792707 499.975