Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g01081 ATGTCATCCTCAAGGCCTAGCCAATCTTCTAGCAATTCGGGGAGATCAAGACATAGCGCTAGAATTATTGCTCAGACCACTGTAGATGCAAAGCTCCATGCTAGTTTTGAGGAGTCTGGTAGTTCCTTTGACTACTCTAGTTCGGTGCGCGCCTCCGGCTCAGCTGATGGAGAAAATCAACCAAGAACAGATAAAGTAACAACAGCTTACCTCCATCACATACAGAAAGGCAAGATGATTCAACCCTTTGGGTGCTTGCTGGCCTTGGATGAGAAAACATGCAAGGTGATTGCTTACAGTGAGAATGCACCAGAGATGCTGACCATGGCGAGTCATGCTGTTCCCAGTGTTGGTGACCACCCTGCCCTTGGCATTGGCACCGACATAAGAACTATTTTCACTGCTCCAAGTGCTTCGGCATTGCAGAAAGCACTAGGATTTGGAGAAGTTCATCTTCTTAACCCCATCCTAGTTCATTGCAAGACTTCTGGGAAACCCTTCTATGCTATTCTCCATCGTGTTACTGGTAGTTTGATTATTGACTTTGAGCCCGTCAAGCCTTATGAAGTTCCTATGACTGCAGCAGGTGCTCTGCAATCCTACAAGCTTGCTGCGAAAGCAATCACCCGATTGCAGTCTTTGCCTAGTGGGAGCATGGAAAGGCTATGTGATACAATGGTTCAAGAAGTTTTTGAACTCACGGGTTATGACAGGGTGATGGCTTATAAATTTCATGAGGATGATCATGGGGAAGTGATTGCTGAGTTAACAAAGCCAGGACTTGAACCATATCTTGGGTTGCACTATCCGTCCACTGATATTCCCCAGGCTGCACGTTTTTTGTTCTTGAAGAACAAGGTCCGTATGATTGTTGATTGTCATGCAAAACATGTAAAGGTTGTTCAAGATGAGAAGCTGCCATTCGATTTGACTTTGTGTGGTTCAACCTTAAGAGCTCCTCATAGTTGCCATTTGCAATACATGTCAAACATGGATTCAATTGCTTCCCTAGTTATGGCAGTTATAGTCAATGACAGCGATGAAGATGCGGACAACTCTGATGCTGTTCAGCCACAAAAGAGAAAGCGACTCTGGGGCTTAGTTGTTTGTCATAACACTACTCCCAGGTTTGTTCCTTTTCCTCTAAGGTATGCTTGTGAGTTTCTGACACAAGTATTTGCCATCCATGTCAACAGAGAAATAGAGTTAGAATATCAGATTACTGAAAAGAATATCCTTCGCACTCAGACGCTCTTGTGTGATATGCTGATGCGAGATGCACCCCTAGGAATTGTATCACAAAGCCCTAATATAATGGACCTAGTTAAATGTGATGGGGCTTCCCTCTTGTATAAAAACAAGGTATGGAGATTAGGAGTAACACCTACTGAATCTCATATAAGAGAGATAGCTTTGTGGTTGTCTGAGCACCATATGGATTCCACAGGTCTTAGTACAGATAGCTTGTATGATGCCGGGTTCCCAGGGGCTCTGTCTCTTGGTGATGTAGTATGTGGAATGGCAGCGGTTAGAATAACTGAGAAAGACATAGTTTTCTGGTTTCGATCACACACAGCTGCAGAAATCAGATGGGGTGGTGCAAAGCATGACCCTGGTGAAAAGGACGACGGCAGGAGGATGCATCCACGGTCATCTTTCAAGGCTTTCCTTGAAGTTGTTAAGTCAAGGAGCTTACCGTGGAAAGACTACGAGATGGATGCTATTCATTCATTGCAACTAATACTAAGAAATGCATTCAAAGAGATGGATAGTATGGACATAACCACAAATGCAATAAATACAAGGCTGAATGATTTGAGGATTGAAGGGATGCAGGAACTGGAAGCCGTGACAAGTGAGATGGTTAGATTAATTGAAACTGCAACAGTACCTATTCTGGCTGTAGATGTTGATGGGCTGGTTAATGGATGGAATATAAAGATTGCCGAATTGACTGGCCTTTCGGTTGGTGATGCTATAGGGAAGCATCTTCTCACGCTCGTTGAGAACTCTTCAGTTGGTATAGTCAAGAAGATGCTTGAGATGGCATTGAAAGGTGAAGAAGAGAAAAACGTCCAATTTGAGATCAAAACACATGGGTCTAAAGTTGATTGTGGTCCTATTAGATTGGTAGTTAATGCTTGCGCAAGCCGGGATATTCATGATAATGTTGTGGGGGTTTGTTTTGTGGCCCAAGACATCACAGCTCAGAAGACTGTCATGGATAAATTTACCCGAATTGAAGGTGATTACAAGGCAATTGTACAGAATCCCAACCCATTGATCCCCCCAATATTTGGAACTGATGAATTTGGCTGGTGTTGTGAGTGGAATGCAGCTATGACAAAGGTGACCGGATGGAAGAGAGAAGAGGTGATGGATAAAATGCTTTTAGGAGAGGTTTTTGGGACTCAGATGGCTTGTTGTCGTCTTAAGAACCAAGAAGCTTTTGTTAATTTTGGTATTGTACTTAATAAAGCCATGACCGGTTTGGAGACAGCAAAGGTTGCTTTTGGTTTCTTTGCTCGTAGTGGGAAGTATGTAGAATGCCTGCTTTCGGTGAGTAAAAAATTGGACGTCGAAGGTGTAGTTACTGGGGTCTTCTGCTTCTTGCAGCTAGCTAGTCCAGAGCTGCAACAAGCATTGCATGTTCAGCGAATATCTGAACAAACTGCCTTGAAGAGACTGAAAGCTTTAACTTATATGAAGAGGCAGATCAGGAATCCTTTATCCGGGATGATGTTTTCGCGGAAAATGTTGGAGGCCACTGAGTTGGGAGCGGAACAAAAGCAACTCCTACACACCAGTGCTCAGTGCCAGTGCCAGCTTAGCAAAGTTCTTGATGACTCAGATCTTGACAGCATCATTGATGGTTACTTGGATCTTGAGATGGCTGAATTCACTCTGCATGATGTATTGGTTGCTTCCCTTAGTCAAGTAATGACAAAGAGTAACACCAAAGCTATCCGAATAGTCAACGATGTCAAAGAGCAAATTGTGACAGAAACCTTATACGGTGATAGTCTTAGGCTTCAGCAGGCCATAGCTGACTTCTTATTGATTTCCATAAACTTCACACCCAATGGAGGTCAAGTTGTAGTAACAGCCACTCTGACCAAAGAACAAATAGGGCAATCTGTCCATCTTGTTAATTTGGAGCTCAGCATAACACATGGTGGTAGTGGGGTGCCATTCTAA 3198 0.435 MSSSRPSQSSSNSGRSRHSARIIAQTTVDAKLHASFEESGSSFDYSSSVRASGSADGENQPRTDKVTTAYLHHIQKGKMIQPFGCLLALDEKTCKVIAYSENAPEMLTMASHAVPSVGDHPALGIGTDIRTIFTAPSASALQKALGFGEVHLLNPILVHCKTSGKPFYAILHRVTGSLIIDFEPVKPYEVPMTAAGALQSYKLAAKAITRLQSLPSGSMERLCDTMVQEVFELTGYDRVMAYKFHEDDHGEVIAELTKPGLEPYLGLHYPSTDIPQAARFLFLKNKVRMIVDCHAKHVKVVQDEKLPFDLTLCGSTLRAPHSCHLQYMSNMDSIASLVMAVIVNDSDEDADNSDAVQPQKRKRLWGLVVCHNTTPRFVPFPLRYACEFLTQVFAIHVNREIELEYQITEKNILRTQTLLCDMLMRDAPLGIVSQSPNIMDLVKCDGASLLYKNKVWRLGVTPTESHIREIALWLSEHHMDSTGLSTDSLYDAGFPGALSLGDVVCGMAAVRITEKDIVFWFRSHTAAEIRWGGAKHDPGEKDDGRRMHPRSSFKAFLEVVKSRSLPWKDYEMDAIHSLQLILRNAFKEMDSMDITTNAINTRLNDLRIEGMQELEAVTSEMVRLIETATVPILAVDVDGLVNGWNIKIAELTGLSVGDAIGKHLLTLVENSSVGIVKKMLEMALKGEEEKNVQFEIKTHGSKVDCGPIRLVVNACASRDIHDNVVGVCFVAQDITAQKTVMDKFTRIEGDYKAIVQNPNPLIPPIFGTDEFGWCCEWNAAMTKVTGWKREEVMDKMLLGEVFGTQMACCRLKNQEAFVNFGIVLNKAMTGLETAKVAFGFFARSGKYVECLLSVSKKLDVEGVVTGVFCFLQLASPELQQALHVQRISEQTALKRLKALTYMKRQIRNPLSGMMFSRKMLEATELGAEQKQLLHTSAQCQCQLSKVLDDSDLDSIIDGYLDLEMAEFTLHDVLVASLSQVMTKSNTKAIRIVNDVKEQIVTETLYGDSLRLQQAIADFLLISINFTPNGGQVVVTATLTKEQIGQSVHLVNLELSITHGGSGVPF 1065
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g01081 1065 SUPERFAMILY GAF domain-like 198 399 - -
Adu09g01081 1065 Pfam PAS fold 620 734 IPR013767 GO:0006355
Adu09g01081 1065 Pfam PAS fold 750 872 IPR013767 GO:0006355
Adu09g01081 1065 ProSiteProfiles Histidine kinase domain profile. 901 1065 IPR005467 -
Adu09g01081 1065 PANTHER PHYTOCHROME A 1 1064 - -
Adu09g01081 1065 Gene3D PAS domain 74 321 - -
Adu09g01081 1065 ProSiteProfiles Phytochrome chromophore attachment site domain profile. 218 391 IPR016132 -
Adu09g01081 1065 Pfam GAF domain 218 401 IPR003018 GO:0005515
Adu09g01081 1065 MobiDBLite consensus disorder prediction 1 23 - -
Adu09g01081 1065 CDD PAS 761 872 IPR000014 -
Adu09g01081 1065 SMART HisKA_10 894 959 IPR003661 GO:0000155|GO:0007165
Adu09g01081 1065 Gene3D - 957 1064 IPR036890 -
Adu09g01081 1065 MobiDBLite consensus disorder prediction 39 63 - -
Adu09g01081 1065 SUPERFAMILY PYP-like sensor domain (PAS domain) 764 870 IPR035965 -
Adu09g01081 1065 Pfam Phytochrome region 414 588 IPR013515 GO:0006355|GO:0009584
Adu09g01081 1065 Gene3D - 199 562 IPR029016 -
Adu09g01081 1065 SUPERFAMILY PYP-like sensor domain (PAS domain) 74 186 IPR035965 -
Adu09g01081 1065 SMART gaf_1 218 411 IPR003018 GO:0005515
Adu09g01081 1065 CDD PAS 628 734 IPR000014 -
Adu09g01081 1065 PANTHER TWO-COMPONENT HISTIDINE KINASE 1 1064 - -
Adu09g01081 1065 Gene3D - 406 579 IPR043150 -
Adu09g01081 1065 Pfam PAS fold 69 185 IPR013654 GO:0006355
Adu09g01081 1065 ProSiteProfiles PAS repeat profile. 617 687 IPR000014 -
Adu09g01081 1065 Gene3D PAS domain 611 748 - -
Adu09g01081 1065 MobiDBLite consensus disorder prediction 1 24 - -
Adu09g01081 1065 SUPERFAMILY PYP-like sensor domain (PAS domain) 623 730 IPR035965 -
Adu09g01081 1065 SUPERFAMILY GAF domain-like 409 588 - -
Adu09g01081 1065 MobiDBLite consensus disorder prediction 37 63 - -
Adu09g01081 1065 ProSitePatterns Phytochrome chromophore attachment site signature. 318 327 IPR013516 -
Adu09g01081 1065 Gene3D PAS domain 763 875 - -
Adu09g01081 1065 TIGRFAM sensory_box: PAS domain S-box protein 624 740 IPR000014 -
Adu09g01081 1065 PRINTS Phytochrome signature 133 155 IPR001294 GO:0006355|GO:0009584
Adu09g01081 1065 PRINTS Phytochrome signature 233 252 IPR001294 GO:0006355|GO:0009584
Adu09g01081 1065 PRINTS Phytochrome signature 318 339 IPR001294 GO:0006355|GO:0009584
Adu09g01081 1065 PRINTS Phytochrome signature 431 451 IPR001294 GO:0006355|GO:0009584
Adu09g01081 1065 PRINTS Phytochrome signature 516 535 IPR001294 GO:0006355|GO:0009584
Adu09g01081 1065 PRINTS Phytochrome signature 549 567 IPR001294 GO:0006355|GO:0009584
Adu09g01081 1065 PRINTS Phytochrome signature 620 636 IPR001294 GO:0006355|GO:0009584
Adu09g01081 1065 PRINTS Phytochrome signature 639 654 IPR001294 GO:0006355|GO:0009584
Adu09g01081 1065 PRINTS Phytochrome signature 712 729 IPR001294 GO:0006355|GO:0009584
Adu09g01081 1065 PRINTS Phytochrome signature 732 752 IPR001294 GO:0006355|GO:0009584
Adu09g01081 1065 ProSiteProfiles PAS repeat profile. 750 802 IPR000014 -
Adu09g01081 1065 SMART pas_2 749 818 IPR000014 -
Adu09g01081 1065 SMART pas_2 619 685 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g01081 Adu-Chr9 20642812 20649036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g01081 1 1064 Histidine Kinase Gene Family AT1G09570 80.376 0.0 1820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g01081 K12120 - gmx:100790763 1856.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu09g01081 09 20642812 20649036 Adu09g01081 09 20642812 20649036 ECH
Adu06g00513 06 6051296 6055407 Adu09g01081 09 20642812 20649036 PCT