Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g01052 ATGGCTGAGAAGAAGCTTGAACTCTTTCGTGCTGGGATGAACCCAACCTCCATTTACGCGAATGATTGTTCTTTGGAGCAAATTGTGGTGAAAGAAGGATCATCGTCAAGTATAAGTAGTAGTATCATAACAACGAAGAAGACACCCTCAAAAGAAAAAGATAATAATAAACACGAAGCGGCAGCAGCAGCATCACAATTCTCATACACATCTTTGTATAATTCATCATCGTCAGCAGCAACAACTACTTTCAAGAAACCAAGAATAGCAGACTCATCATTATTAAACCAACAAGACTTTGCAGCAGGAAAGCTCATGAATTTCTCCGCTTTTTTAAGACCTTCAATGCTTAGTCAGAATAATTCTGTTTCACGTGAGGCTGATAACAACAAAGAGGAACCGTTTCCTGAAAAGCAGTTAAAATCTGTTAGTAATAATAATAAGAGGAAAGTGGTGGATAACGGCTTCTGTAACGAACCCTTGATAGAATATTCGTCTGTGTGTTCGCTTGGAGCGTCAACAAACAATACACACATTTATAGCCGGAAACAAGACCTCCATGACTCCACCTACTTAAGCGAGAATGATGAAGACATAGAAGATCAGCGAAGAGACAAGATCAACAAGAAACTGCGCGTACTGAAAGATCTCATACCCAATTGTAATAAGGTAGACAAGGCTTCACTGCTTGATGATGCCATTGAATATCTTAAGGCCTTAAAACTTCATTTACAGATTATGACAATGGGAACCGGGCTATGCATGCCTCCAATGATGCTACCTACATCTTCTCCAACCCAGCAATTACAACAACAGTTAATGGGTTTGAGGCCTGGAATTAACATCCCTTGCAACATGGCTCAGTTCAATAGTATTCCACCACTACCTAATGGAGTTGGCATGTTTGGTTTCCCTAACCAATTCTTACCCGTCATTCCGCCAAATCCAATGTCTCATGCACCTTTCACTACTACTACTACTCATCCCATGCTTGGAAATAATAATAATAATAAGGCTAACAATCTTTGTACACAACCGCCACTACTTCAAACAACCAATAATATCTCAGCTCTAAAGTAG 1080 0.3972 MAEKKLELFRAGMNPTSIYANDCSLEQIVVKEGSSSSISSSIITTKKTPSKEKDNNKHEAAAAASQFSYTSLYNSSSSAATTTFKKPRIADSSLLNQQDFAAGKLMNFSAFLRPSMLSQNNSVSREADNNKEEPFPEKQLKSVSNNNKRKVVDNGFCNEPLIEYSSVCSLGASTNNTHIYSRKQDLHDSTYLSENDEDIEDQRRDKINKKLRVLKDLIPNCNKVDKASLLDDAIEYLKALKLHLQIMTMGTGLCMPPMMLPTSSPTQQLQQQLMGLRPGINIPCNMAQFNSIPPLPNGVGMFGFPNQFLPVIPPNPMSHAPFTTTTTHPMLGNNNNNKANNLCTQPPLLQTTNNISALK 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g01052 359 Pfam Helix-loop-helix DNA-binding domain 198 240 IPR011598 GO:0046983
Adu09g01052 359 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 191 240 IPR011598 GO:0046983
Adu09g01052 359 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 200 337 - -
Adu09g01052 359 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 143 201 - -
Adu09g01052 359 PANTHER TRANSCRIPTION FACTOR PIF3 143 201 IPR044273 GO:0003700|GO:0006355
Adu09g01052 359 PANTHER TRANSCRIPTION FACTOR PIF3 200 337 IPR044273 GO:0003700|GO:0006355
Adu09g01052 359 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 199 263 IPR036638 GO:0046983
Adu09g01052 359 SMART finulus 197 246 IPR011598 GO:0046983
Adu09g01052 359 MobiDBLite consensus disorder prediction 121 142 - -
Adu09g01052 359 Gene3D - 187 241 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g01052 Adu-Chr9 19782078 19784349 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g01052 200 306 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 45.794 2.42e-21 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu09g01052 HLH 1.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g01052 K12126 - gmx:100818543 169.088
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu09g01052 09 19782078 19784349 Adu09g01052 09 19782078 19784349 ECH
Adu06g00533 06 6422878 6424634 Adu09g01052 09 19782078 19784349 PCT