LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu09g01023	ATGGCAAGTTTATTTTTAAAGAGTCCCATCTCCAAAAATGTTCTCGACTTGAAGAAGTTTGGTGTCAAAGGTTGCTGGATGTCTTCCTGCCTCCAACTTGGAGTCTTGGAGAAAGAGTTCTGGAAAGAAGTTGCTTGTGGAAAAATGGAAACAGTTCAATATGCATGTGATGTTGATGCAGTGCCTTCTCATCTCCTTCTGATAAGCTTGGTAGCAAAACTTTTTCGGTTGCCAAAATCTGCATGGCGGCTCTTGGAATCATCTATTCCAATAAAATTAATTATCATCACTGTGGGGTATCAAAATGATATTCTAGGTCATGCAGCATTGGACTTTGAAAGGGTGGTGAGAGAACATGTGTATATACTAATGATATTTTGCCAAGTGATGGAGAAAATGGAGCCTTTGATGTTTTTTTGGGGGAAAACAATTCTATTTTCGTCAAATAGTGTGTTGGAACATGAAGTCCCCATTTACAAGGCTGTTCAAAAGCTAGGGGAGTTTGTGATTACCTTCGCTAAGGCAGACCATGTTGGATTCAGTCATGATTAA	552	0.3931	MASLFLKSPISKNVLDLKKFGVKGCWMSSCLQLGVLEKEFWKEVACGKMETVQYACDVDAVPSHLLLISLVAKLFRLPKSAWRLLESSIPIKLIIITVGYQNDILGHAALDFERVVREHVYILMIFCQVMEKMEPLMFFWGKTILFSSNSVLEHEVPIYKAVQKLGEFVITFAKADHVGFSHD	183

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu09g01023	183	Gene3D	Cupin	104	183	-	-
	Adu09g01023	183	PANTHER	TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN	104	182	-	-
	Adu09g01023	183	PANTHER	TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN	27	90	-	-
	Adu09g01023	183	PANTHER	LYSINE-SPECIFIC DEMETHYLASE	104	182	-	-
	Adu09g01023	183	PANTHER	LYSINE-SPECIFIC DEMETHYLASE	27	90	-	-
	Adu09g01023	183	Pfam	JmjC domain, hydroxylase	142	182	IPR003347	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu09g01023	Adu-Chr9	18877304	18883514	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu09g01023	109	182	C2H2 Transcription Factor Family	AT5G04240	39.189	3.36e-09	53.5

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	Jumonji	Adu09g01023		JmjC	8.1e-08	CL0029

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu09g01023	-		-	gsj:114408462	136.732