Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g01004 ATGAGGCACTCTCATTATATCTTAGCATTTTTCTTCACTTTAATTCTTACAACTCAAGCAAGACACCATCACCATACAAAACACAAACACTCTTCACATTCTAATAATAATGACAATAATAGTAATAATCAATCATATCCTCCTTCTCCTTCTCCTTCTTCCGGAATTTCAGTGCCTCCTGTGGCTGCACCCGGTGGTTATGACAATGAAGCTCCTAGTCCTAGTCCCTCTGATGATGATGGCTCCGAAATCTTCGATGTTCGAACATTTGGGGCCATTGGAGATGGTATAGCTGATGATACAAATTCCTTCAAGATGGCGTGGGACAGTGCTTGCCAAAGTGAATCAGCAATTAACGTTGTACTTGTTCCTCGCGGTTTCTCGTTCATGGTCCAGTCTACAATCTTCACTGGTCCCTGTCAAGGTGGCTTAGTGTTAAAGGTTGATGGCACTCTCATGCCACCAGATGGACCTGAATCTTGGCCAAACAACACAAGTAGGCGTCAATGGCTTGTCTTTTACAGAATCAATAATATGTCACTACAAGGAAGTGGTGTTATTGATGGCAGAGGACAAAATTGGTGGGACCTTCCTTGTAAGCCTCATAAGGGACCTAATGGGACTACACTTCCAGGACCTTGTGATAGCCCAGTTGCATTAAGGTTTTTCATGAGTTCAAACTTGAGTGTGCAAGGACTTAGAATCAAGAACAGTCCCCAGTTCCATTTCAGATTTGATGGCTGCAAAAGCGTTCGAGTAGATTCAATCTTCATAACATCTCCAGCACTAAGTCCCAACACCGATGGAATACACATAGAAAACACAAATGACGTAAGGATATACAATTCCGTCATTTCCAACGGTGATGACTGTGTGTCCATTGGAACGGGTTGCTATGATGTTGAGATAAAGAACATTACATGTGGTCCCAGCCACGGAATTAGCATTGGTAGTTTGGGAAACCACAACTCAAGAGCCTGCGTCTCAAACATTACAGTAAGAGAGTCAACGATCAAAGGGTCAGACAATGGAGTAAGAATAAAAACATGGCAAGGAGGATCAGGATCAGTATCAAAAGTAACATTCAGCAAGATTCACATGGAGAGTGTACGGAACCCAATAATAATCGACCAATTCTATTGCCTATCGAAAGATTGCAGCAACAAAAGCTCGGCAGTATTTGTATCAGACATAGTATACTCAAACATAAAGGGGACATATGATATAAGGCACCCACCCATGCGTTTCGCTTGCAGTGACTCTGTGCCTTGCACTAACTTAACTCTTTCTGATATTGAGCTTCTTCCTGCACAGGGTGATCTTTTTAATGACCCTTTTTGTTGGAATGCTTATGGCAATTCGGAGACACTAACTATTCCTCCTGTTTCTTGCTTGATTGAGGGTCTTCCTCAGTCTCTTCCAGGGAATGATTTATCTCGTTGCTGA 1446 0.4232 MRHSHYILAFFFTLILTTQARHHHHTKHKHSSHSNNNDNNSNNQSYPPSPSPSSGISVPPVAAPGGYDNEAPSPSPSDDDGSEIFDVRTFGAIGDGIADDTNSFKMAWDSACQSESAINVVLVPRGFSFMVQSTIFTGPCQGGLVLKVDGTLMPPDGPESWPNNTSRRQWLVFYRINNMSLQGSGVIDGRGQNWWDLPCKPHKGPNGTTLPGPCDSPVALRFFMSSNLSVQGLRIKNSPQFHFRFDGCKSVRVDSIFITSPALSPNTDGIHIENTNDVRIYNSVISNGDDCVSIGTGCYDVEIKNITCGPSHGISIGSLGNHNSRACVSNITVRESTIKGSDNGVRIKTWQGGSGSVSKVTFSKIHMESVRNPIIIDQFYCLSKDCSNKSSAVFVSDIVYSNIKGTYDIRHPPMRFACSDSVPCTNLTLSDIELLPAQGDLFNDPFCWNAYGNSETLTIPPVSCLIEGLPQSLPGNDLSRC 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g01004 481 SUPERFAMILY Pectin lyase-like 83 467 IPR011050 -
Adu09g01004 481 SMART pbh1 225 274 IPR006626 -
Adu09g01004 481 SMART pbh1 298 318 IPR006626 -
Adu09g01004 481 SMART pbh1 275 296 IPR006626 -
Adu09g01004 481 SMART pbh1 328 349 IPR006626 -
Adu09g01004 481 SMART pbh1 357 378 IPR006626 -
Adu09g01004 481 PANTHER POLYGALACTURONASE/GLYCOSIDE HYDROLASE FAMILY PROTEIN 9 471 - -
Adu09g01004 481 MobiDBLite consensus disorder prediction 23 84 - -
Adu09g01004 481 MobiDBLite consensus disorder prediction 35 51 - -
Adu09g01004 481 ProSitePatterns Polygalacturonase active site. 305 318 IPR000743 GO:0004650|GO:0005975
Adu09g01004 481 Gene3D - 69 466 IPR012334 -
Adu09g01004 481 Pfam Glycosyl hydrolases family 28 116 434 IPR000743 GO:0004650|GO:0005975
Adu09g01004 481 PANTHER - 9 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g01004 Adu-Chr9 18297759 18302024 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g01004 79 481 Glycoside Hydrolase AT1G02460 70.690 0.0 612
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g01004 - - gmx:100792285 757.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu09g01004 09 18297759 18302024 Adu09g01004 09 18297759 18302024 ECH
Adu06g00571 06 6787390 6795456 Adu09g01004 09 18297759 18302024 ECH
Adu04g00795 04 11204854 11209131 Adu09g01004 09 18297759 18302024 ECH
Adu06g00571 06 6787390 6795456 Adu09g01004 09 18297759 18302024 PCT