Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g00954 ATGGGAAAAATCCTGCTTGAAGTTCCTGGATTATTGGTATTGCATGATGGACACACGCCACAAAATCAGAGTAGTCAGATTTGGAAAGTTCTTTCTGAGATTCAAAATCACAAAAGAATCATCCTTTTTGGGACTCCTTTCCAAAACAATTATCTGGAGCTTTACAATACAATCTGCATGGTCAGACCGTCCTTTTCAGATACCAGACCTCCTGAGCTTAAAAAGTTCTACCAAAGAAGATTGATGCAAGAGATGAAAGAATCTAAAGGTTTCAGTTGGGAACTAGTTTCTTCATTCAAAACTGGGAATCTAAATGATGAGAACATCAAGCAGTTGAAGCAGCTGATGGATCCATTTTGGCATGTTCACAAAGGCAATATTCTTCAAAAGAATTTTCCTGGCTTGAAAGATTGGAGGAGGAGGGAAGGCGGTGCGGTGGGCGTCACTGCCACCGTCGCCGCCGCTACTGACAAGGAGATAGGAGATCTGCGAGAGCCGAGGAAGGAGAAGGAAGAGAAGGCCGCACTGCCAACGCCGTCCCTGCGCCGTCACCACTTGGTCCGTCCACGAGCTGCCGCCGGAACCACGCAAGGAGGAGCGTTGCCGTCCTGTGGAACCGTGTCGTCGCCGTTCAGCCCACCGTCAGAGNNNNNNNNNCTGCCGTCATTGACGAGCCCAGCCGCCGCCATCACATCTGCATTGCTGTTGATGGTGCCATTGCCAGGTAACTTTGCCGTCGCCGTCACTAGGGTCTTTGCTCGTGACTGTCACTTGGGGTTATTGTTAGAGCTATTGTCGAGTCGATTTGGAATCACAGCTGCTTCATTTTGTTATTTCGAGTCATTGTGCCATGCAAAGATCTTGCTTGCATCCATTAAAGCTTGCTGTAAAGGAATCAGTCTGGTTGGTGCTTCACGGGTGGTGCTACTAAATGTGGTTTGGAACCCCTCGGTCGAAAGGCAAGCTATCATCCGTGCTTATAGGCTGGGCCAAAAGAAGGAGGTATACACTTATCATCTCATAACACATGGGACCACCGAGTACGCGAAATACTGCCATCAGGCCAAGAAGGACCGATTGTCTGAACTGGTCTTTTTAGCAAGGAACACTGAACAGGATGAGCCCAAGAGTTCTGTTGTGGAATTCGAGGATGAAATTCTTGATAAAATGGTGCGCCATGGGAAACTTAAGGACTTGTTTGGTGACTGTGTGGTGCAACCAAAGGATTGTGATTTGATTGATAATTTGGATCCTAAAATTTTCTGA 1266 0.4692 MGKILLEVPGLLVLHDGHTPQNQSSQIWKVLSEIQNHKRIILFGTPFQNNYLELYNTICMVRPSFSDTRPPELKKFYQRRLMQEMKESKGFSWELVSSFKTGNLNDENIKQLKQLMDPFWHVHKGNILQKNFPGLKDWRRREGGAVGVTATVAAATDKEIGDLREPRKEKEEKAALPTPSLRRHHLVRPRAAAGTTQGGALPSCGTVSSPFSPPSEXXXLPSLTSPAAAITSALLLMVPLPGNFAVAVTRVFARDCHLGLLLELLSSRFGITAASFCYFESLCHAKILLASIKACCKGISLVGASRVVLLNVVWNPSVERQAIIRAYRLGQKKEVYTYHLITHGTTEYAKYCHQAKKDRLSELVFLARNTEQDEPKSSVVEFEDEILDKMVRHGKLKDLFGDCVVQPKDCDLIDNLDPKIF 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g00954 421 Gene3D - 4 128 IPR038718 -
Adu09g00954 421 Pfam SNF2-related domain 12 133 IPR000330 GO:0005524|GO:0140658
Adu09g00954 421 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 3 137 - -
Adu09g00954 421 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 283 414 - -
Adu09g00954 421 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 283 414 IPR044567 GO:0080188
Adu09g00954 421 CDD SF2_C_SNF 286 341 - -
Adu09g00954 421 Gene3D - 276 412 IPR027417 -
Adu09g00954 421 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 10 365 IPR027417 -
Adu09g00954 421 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 3 137 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g00954 Adu-Chr9 16151280 16158307 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g00954 287 379 RAD5 or RAD16-like Gene Family AT5G05130 41.935 9.33e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu09g00954 SNF2_N 6.5e-09 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g00954 K10875 - csin:114301821 256.529