Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g00885 ATGATGCGCACTATCCACACCACACCCAACAACAAAGACAAAGATTCAAAGAACAAAGAAGGAGAAGAAGAAGAAAGTGTTGCTTTTCTTTCTTTCTTTGAAATCATTGTGAACGACCCATCAAAATTTCACACACTGAAATGCTTATTTGATTTAAAAGATTGGTTCTTTTCATCGTTTCTCAATCTGGAAAGAGGCAGAGGAGCTGCGGCTCTGAAACCCACAGTGACGGTTGCGGCGGCGGAGGTAAACGGATCAGGATCGATGCCATTATTGAAGGAAGTTAGATTATGTGGCGTAAGGAAGAGACCATGGGAAAGATTCGCCGCCGAAATCAGAGACCCGTTGAAGAAAGCAAGGGTTTGGCTCGGAACCTTCGATTCCGCCGAGGACGCCGCACGCGCTTACGACGCCACTGCAAGAACACTCCGGGGACCAAAAGCCAAGACCAATTTTCCTCATCGCTCAGGATCCAGCCGCCTCCATCATGCACAGTGTCTTCTCCTTCCTCTAATTTTTCTAGAATTATGA 531 0.4652 MMRTIHTTPNNKDKDSKNKEGEEEESVAFLSFFEIIVNDPSKFHTLKCLFDLKDWFFSSFLNLERGRGAAALKPTVTVAAAEVNGSGSMPLLKEVRLCGVRKRPWERFAAEIRDPLKKARVWLGTFDSAEDAARAYDATARTLRGPKAKTNFPHRSGSSRLHHAQCLLLPLIFLEL 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g00885 176 CDD AP2 99 154 IPR001471 GO:0003700|GO:0006355
Adu09g00885 176 MobiDBLite consensus disorder prediction 1 20 - -
Adu09g00885 176 Gene3D AP2/ERF domain 97 155 IPR036955 GO:0003700|GO:0006355
Adu09g00885 176 ProSiteProfiles AP2/ERF domain profile. 96 153 IPR001471 GO:0003700|GO:0006355
Adu09g00885 176 PIRSF PTI6 88 163 IPR017392 GO:0003700
Adu09g00885 176 PIRSF PTI6 1 27 IPR017392 GO:0003700
Adu09g00885 176 SUPERFAMILY DNA-binding domain 98 154 IPR016177 GO:0003677
Adu09g00885 176 PRINTS Ethylene responsive element binding protein signature 97 108 IPR001471 GO:0003700|GO:0006355
Adu09g00885 176 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
Adu09g00885 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 3-RELATED 67 162 - -
Adu09g00885 176 Pfam AP2 domain 99 145 IPR001471 GO:0003700|GO:0006355
Adu09g00885 176 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 67 162 - -
Adu09g00885 176 SMART rav1_2 96 159 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g00885 Adu-Chr9 13762384 13762985 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g00885 63 153 AP2-EREBP Transcription Factor Family AT1G50640 69.231 2.50e-35 121
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Adu09g00885 AP2 2.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g00885 K09286 - nnu:104606510 118.242