Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g00880 ATGGCGGCTTTAGAATCAAGTTTGAGAGTGTTAGCAGGAGTTCATCCTTCTTGGTGTTCCAACAACAGAAAAGCACCCCAAACCATATCCATAAGGCTCCTCCGCACACGTGTCTGCACCTCTGTTGCTTCTTCCACTCCCACTTCCACTGCCACTACCCCTACCCCTTTGGATTTCCAACATGAACTTCTCCAGCACACCACAAACCTCAAGAAGCTTTACGCCTCTAACTTGCCCTGGTCACTCTCCCCCGCCGACGTCAAGGCTCTCTTTTCTCAATGCGGAACGGTTACCGATGTTGAGATGATAAAGAACAAGGATGGTGGATTGACTGGCTTCGCCTTCATTACCATGTCTTCTGCCCAAGAGGCTCAGGCTGCTATTCATAAATTCCACTCTCTTCAAATATCAGGCCGGACAATTAAAGTAGAGCTTGCAAAGAGATTTAAGAAACCCCGTCCTCCAGGTCCTCCTGCCGGAGAGACGCGTCATAAAATTTATGCATCCAATCTTGCTTGGAAAGTAAGATCTGGCCATCTCAGAGAATTCGTCACTGAGAATTTTAGAGAACCAGTTTCAGCCAGAGTTGTGTTCGATAGTTCTTCTGGAAGATGTGCTGGTTATGGATTTGTTTCTTTTGTTACAAAGGAGGAAGCAGAGGATGCCATTTCTTCTTTGGATGGGAAGGAATTAATGGGGCGAGCGGTTCGCCTAAAATTTAGCCGAAAGACCATTGAAGAAGCTGATACTGATAGTGGCAAAGAAGAGCAGGGTTATCATGATCAATTGGAAGCACCATAA 801 0.4619 MAALESSLRVLAGVHPSWCSNNRKAPQTISIRLLRTRVCTSVASSTPTSTATTPTPLDFQHELLQHTTNLKKLYASNLPWSLSPADVKALFSQCGTVTDVEMIKNKDGGLTGFAFITMSSAQEAQAAIHKFHSLQISGRTIKVELAKRFKKPRPPGPPAGETRHKIYASNLAWKVRSGHLREFVTENFREPVSARVVFDSSSGRCAGYGFVSFVTKEEAEDAISSLDGKELMGRAVRLKFSRKTIEEADTDSGKEEQGYHDQLEAP 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g00880 266 SMART rrm1_1 165 239 IPR000504 GO:0003723
Adu09g00880 266 SMART rrm1_1 72 144 IPR000504 GO:0003723
Adu09g00880 266 SUPERFAMILY RNA-binding domain, RBD 152 245 IPR035979 GO:0003676
Adu09g00880 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 142 IPR000504 GO:0003723
Adu09g00880 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 236 IPR000504 GO:0003723
Adu09g00880 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 148 IPR000504 GO:0003723
Adu09g00880 266 SUPERFAMILY RNA-binding domain, RBD 66 157 IPR035979 GO:0003676
Adu09g00880 266 PANTHER CHLOROPLAST, PUTATIVE-RELATED 28 258 - -
Adu09g00880 266 CDD RRM_SF 73 144 - -
Adu09g00880 266 Gene3D - 59 161 IPR012677 -
Adu09g00880 266 Gene3D - 162 264 IPR012677 -
Adu09g00880 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 243 IPR000504 GO:0003723
Adu09g00880 266 MobiDBLite consensus disorder prediction 243 266 - -
Adu09g00880 266 PANTHER OS02G0815200 PROTEIN 28 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g00880 Adu-Chr9 13591426 13594239 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g00880 73 254 Eukaryotic Initiation Factors Gene Family AT4G34110 28.342 1.38e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g00880 - - gmx:100792275 246.514