Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g00839 ATGGACACTATGCACTCTGTTCTCAAGCAATATTTTGGGTTTTCAGATTTTCGGCCTTATCAGAAAGATGCCATTCAGAAAATTATTGAGAAAAGGGACTGCTTGGTAGTCATGGCTACTGGTAGTGGGAAATCCTTGTGTTACCAGGTACCACCCTTGGTTGTTAGAAAGACTGGGATAGTTGTTAGCCCTCTAATATCATTGATGCAAGACCAGGTAATGGCTTTAAAACAGCGGGGCATCAAGGCTGAATATCTTGGAAGTGCTCAGAAGGATTCCACTGTTCAGAGAAAAGCCGAGCAGGGTCAATTTGACATTTTGTTCATGACTCCGGAAAAGGCTTGCTCAGTTCCTACCAGTTTCTGGTCTAACTTGCTGAAGGAAGGAATTAGCCTTTTTGCTGTTGATGAAGCTCATTGTATATCAGAATGGGGGCATGATTTTAGGGTGGAATACAAGAACTTAGACAATTTACGTGGTGTTCTACTAGATGTTCCTTTTGTTGGCTTAACTGCCACAGCTACTGAAAAGGTTCGATTTGACATTATCAACTCCCTGAAGTTGAAGAATCCATATGTTTTGGTTGGTTCATTTGATCGCTCCAATCTTTTCTATGGGGTCAAGCCATTTAGCCGTGGACCATCTTTTGTTAATGAACTTGTACAAGAAATTTCAAAAGTTGTTAGTAGTGGTTCAACTATAATTTACTGCACAACAATAAAGGACGTAGAGCAGATATCCAAGTCACTTGCAGAAGCAGGAATTGAGGCTGGAATGTACCATGGCCAAATGGATAAAAAATCTCGTGAAGAGTCTCATAGGTTATTTGTCAGGGATGAACTGCAAATCATGGTGGCTACAATTGCTTTTGGCATGGGCATAGATAAGCCTAACATAAGACAAGTGATTCATTATGGTTGCCCTAAGAGTCTTGAGTGCTACTACCAGGAAAGTGGACGCTGTGGTAGAGATGGTATAGCTTCTGTTTGTTGGCTTTATTACACAAGAAGTGACTTTGCAAAGGGTGACTTTTATTGCGGAGACCTAAAAACAGAAACCCAAAAAAGAGCTGTTATGGAGTCATTGCTTGCTGCTGAACGTTATTGTGTGCTTGCAACTTGCAGGAGAAAGTTCTTGCTTGAACACTTTGGGGAACAATATCCAGCTGATAGATGTGGAAACTGTGATAACTGCACAGTCTCAAAGAAGGAGCGCGACATGTCTAGAGAAGCATTTCTTCTAATGGCTTGCATTCATTCATGCAAGGGAAAATGGGGTCTTAATATGCCCATTGATATCTTGCGTGGGTCTCGAGCGAAAAAGATTCTCGATGCTCAGTTTGATAAGCTTCCCCTTCATGGACTTGGAAAAACTTACGCACCAAACTGGTGGAAAGCACTCGGGCATCAATTGATCGCTCATGGTTATTTGAAAGAAACTGTCAGTGATGTGTACAGAACTATAAGTGTCAGTTTAAAAGGAGAACAATTTTTGGCCTCTTCTACACCTGATTATCAACCTTCCTTAGTTTTGTCACTGACTGCTGAGTTGCTCGGAGAAGAGGAAAATATGAGCACACAAGAAGAATCAAAGACTCTGGCCACTTCAGATTTAGACGGGTTTTCAGAGGTTGAGCGACAGCTCTACCAGATGCTTTTAGAAGAAAGATTAAAGCTTGCAAGAAGTGTTGGAACTGCTCCATATGCCATATGTGGCGATCAAACAATCAAGAAAATTACTCTTGTAAGACCATCTACAAAAGCAAGGCTAGCAAACATTGATGGTGTGAATCAGCACCTAGTAACAAAATATGGAGATCATTTTCTTAGAGTTATCCAGCAACTGTCACAAGGATTAAACTTACCATTGGACGGGGAAGCTAATTTACTAAATAACGAAGTAAGGAAATTATCTACAGTGTCAGTAAAAAACAGTTCAAAGAAGTTGACACCAGCAAAGTTTGAAGCATGGAAAATGTGGCATGAAGATGGTCTTTCTATTCAGACGATTGCTAACTTTCCAGGTAGATCAGCTCCTATAAAAGAGCAAACTGTTGCTGAATATCTGTTGGAAGCTGCACAAGAAGGATTACCTTTTGATTGGAGTAGATTCTGTGAGGTGATAGGACTGACGCAAGAGATCGAATCTGAAATTCAGGGTGCTATTTTAAAGGTTGGATCTAAAGATAAGCTGAAGCCTATAAAAGATGAATTGCCAGAAAATGTCACTTATCAGCACATCAAGACTTATTTGACAATGCAAAGCTGTGGTGTATCCAAAGATGACATCCAGGCTCAGAAAGACAGCGAATCGGAAATACAGCAAGTGGAAACGCATTGTGAAGCCAACATTTCTGAGCACAGCTTGATGGAAAAATGTGACTTGGAAATGGATATAGTACCATCTAGACCAGTGGAATTCACAACCAAACGTCAGAAAGTCAGTGACATGAAGGAAATAAATTCAACTGACTTTAAAGCTACTGAGAATTCTATATTAGAGTGGCTAAAGCACCATGATGAAGGGGCTACTTTGGTTGAAATTCAAGGGCACTTCAACGGGTCTGGCAAAGATTGTGTGGTTGATCTGCTGAATTTATTGGAAAGTGACTTTTTAATTTATAAAAAAGGTGGCATGTATAGGGTCCTGTAA 2652 0.4038 MDTMHSVLKQYFGFSDFRPYQKDAIQKIIEKRDCLVVMATGSGKSLCYQVPPLVVRKTGIVVSPLISLMQDQVMALKQRGIKAEYLGSAQKDSTVQRKAEQGQFDILFMTPEKACSVPTSFWSNLLKEGISLFAVDEAHCISEWGHDFRVEYKNLDNLRGVLLDVPFVGLTATATEKVRFDIINSLKLKNPYVLVGSFDRSNLFYGVKPFSRGPSFVNELVQEISKVVSSGSTIIYCTTIKDVEQISKSLAEAGIEAGMYHGQMDKKSREESHRLFVRDELQIMVATIAFGMGIDKPNIRQVIHYGCPKSLECYYQESGRCGRDGIASVCWLYYTRSDFAKGDFYCGDLKTETQKRAVMESLLAAERYCVLATCRRKFLLEHFGEQYPADRCGNCDNCTVSKKERDMSREAFLLMACIHSCKGKWGLNMPIDILRGSRAKKILDAQFDKLPLHGLGKTYAPNWWKALGHQLIAHGYLKETVSDVYRTISVSLKGEQFLASSTPDYQPSLVLSLTAELLGEEENMSTQEESKTLATSDLDGFSEVERQLYQMLLEERLKLARSVGTAPYAICGDQTIKKITLVRPSTKARLANIDGVNQHLVTKYGDHFLRVIQQLSQGLNLPLDGEANLLNNEVRKLSTVSVKNSSKKLTPAKFEAWKMWHEDGLSIQTIANFPGRSAPIKEQTVAEYLLEAAQEGLPFDWSRFCEVIGLTQEIESEIQGAILKVGSKDKLKPIKDELPENVTYQHIKTYLTMQSCGVSKDDIQAQKDSESEIQQVETHCEANISEHSLMEKCDLEMDIVPSRPVEFTTKRQKVSDMKEINSTDFKATENSILEWLKHHDEGATLVEIQGHFNGSGKDCVVDLLNLLESDFLIYKKGGMYRVL 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g00839 883 Gene3D - 401 526 IPR036388 -
Adu09g00839 883 SUPERFAMILY HRDC-like 541 617 IPR010997 GO:0000166|GO:0044237
Adu09g00839 883 Pfam HRDC domain 546 612 IPR002121 GO:0003676
Adu09g00839 883 SMART hrdc7 542 622 IPR002121 GO:0003676
Adu09g00839 883 ProSiteProfiles HRDC domain profile. 542 622 IPR002121 GO:0003676
Adu09g00839 883 SUPERFAMILY "Winged helix" DNA-binding domain 397 503 IPR036390 -
Adu09g00839 883 SMART ultradead3 13 208 IPR014001 -
Adu09g00839 883 PANTHER WERNER SYNDROME ATP-DEPENDENT HELICASE 4 744 - -
Adu09g00839 883 Pfam RQC domain 403 499 IPR018982 GO:0006260|GO:0006281|GO:0043138
Adu09g00839 883 Gene3D - 1 198 IPR027417 -
Adu09g00839 883 Gene3D - 200 400 IPR027417 -
Adu09g00839 883 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 219 369 IPR001650 -
Adu09g00839 883 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 339 IPR027417 -
Adu09g00839 883 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 25 192 IPR014001 -
Adu09g00839 883 Pfam RecQ zinc-binding 350 399 IPR032284 -
Adu09g00839 883 SMART RQC_2 406 510 IPR018982 GO:0006260|GO:0006281|GO:0043138
Adu09g00839 883 Pfam Helix-turn-helix domain 655 751 IPR029491 -
Adu09g00839 883 SMART helicmild6 244 325 IPR001650 -
Adu09g00839 883 TIGRFAM recQ_fam: ATP-dependent DNA helicase, RecQ family 6 457 IPR004589 GO:0004386|GO:0006310
Adu09g00839 883 Gene3D HRDC domain 540 621 IPR044876 -
Adu09g00839 883 CDD DEXHc_RecQ 5 199 - -
Adu09g00839 883 Pfam DEAD/DEAH box helicase 19 178 IPR011545 GO:0003676|GO:0005524
Adu09g00839 883 PANTHER DNA HELICASE RECQ FAMILY MEMBER 4 744 - -
Adu09g00839 883 CDD SF2_C_RecQ 200 334 - -
Adu09g00839 883 Pfam Helicase conserved C-terminal domain 218 324 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g00839 Adu-Chr9 12773366 12784837 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g00839 12 341 Eukaryotic Initiation Factors Gene Family AT3G19760 21.512 7.18e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g00839 K03654 - gmx:100797777 1404.81