Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g00743 ATGGCGAACAAACATTCACCTTTGGAGCCACACGAACTCAGCAGCGACCAGGGTTCCTACTGTGACGATTTCGAAGGAGATCCCTTTTATGAAGAAACGGAGAGCAAGTTCTCATACCTCTCACTCTCACCTTCCACGAACAAGGCACAAGCAAGAGTTGTTGATGGTACAAATCCAGAAGAGATAGAGATAACAACACCTGCTTCTAACGAAGTAAATTTTGAGAGGGTTGAAAGGTTAATCAAAGGGGGAATGCTAGAGAGATTGAAAGTTGACGAATGCAAGTTGTATTTGCGAAAGAATTGTCTTAGGCTATCTGGAAATAAGGATGTACTCGTCCAGCGTATTAAGGAGCATCTGCAGATCATAAATGGTGGAGGCGAAAGAAAGTACCCACGCTCTAGCTTTGTGTTGGACTGTAAAGGTGATGCATGCACTGGGGATGTTGTTTTGTTTGAGCAGAATGTTTATGAAATGTTCAACATAGCATCTAGAAGTGCCAGCGGTCCATCATGTGGTAAAAGGACTGTTGCAGGTCGCATAGTGAAAGAAAGCTATGGCACTGCCAAGCAGCAGCATACTTTTACGATTGAAGTACTCTGGAGCAAAGGAGAAAAGCCTTTTCCTCCGCTTCATCCCCTATTGATTAAGGGTCGAAACCTTTATAGGTTGAAGACTTTGAGACAGAAATGGGAGGATGAAGGGGAAAGGCAGAAAATATTGACGGAGAAACACTCGAGGGGATCTATTGCTCGGGCAGATAGAGAAGCAAGGGTACAAGAAAAAGTGAACAGACAAGCAATTGTGGAAAACAGGGTCTCCAGAAAGCATTCAGTAATACATCATCCTCATGCCATTAATCAAGAAAAACCAGCATTCCCATCTAAGAGTTCAGCTGTATCTGCCATTAATCAAGAAAAACCACCATTCCCATCAGCAGTGACCGAACAGTGGAGTAAGTCTGCTAGTTCTAGACGATCGAATGAATCGACATCATTTGGTGTTAACCATGTAAATAACCAGCAAGATTGGAAGCACTCATCTGACCCAATCATTAAAGCTCAACTTGGTGACCTCCACTCCAAAGAAAAAGGGCAATACCAATACCATCCTAGTGAGAGAAACAGGTTTGCACACAGAAATCCTTTGACTAGTGCTAATCACCTTCTTCCGTTGCTGAACAACAGAGAAATCCACAAGCAAAAGCAGCTATGTAGATATTATGCTGGTGGGGGGTGCTATTTTGGGGACAATTGCAAATTTGTACATGATTTGATACTATCAAATcaagaacaaagtcttatccagtag 1311 0.4195 MANKHSPLEPHELSSDQGSYCDDFEGDPFYEETESKFSYLSLSPSTNKAQARVVDGTNPEEIEITTPASNEVNFERVERLIKGGMLERLKVDECKLYLRKNCLRLSGNKDVLVQRIKEHLQIINGGGERKYPRSSFVLDCKGDACTGDVVLFEQNVYEMFNIASRSASGPSCGKRTVAGRIVKESYGTAKQQHTFTIEVLWSKGEKPFPPLHPLLIKGRNLYRLKTLRQKWEDEGERQKILTEKHSRGSIARADREARVQEKVNRQAIVENRVSRKHSVIHHPHAINQEKPAFPSKSSAVSAINQEKPPFPSAVTEQWSKSASSRRSNESTSFGVNHVNNQQDWKHSSDPIIKAQLGDLHSKEKGQYQYHPSERNRFAHRNPLTSANHLLPLLNNREIHKQKQLCRYYAGGGCYFGDNCKFVHDLILSNQEQSLIQ 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g00743 436 MobiDBLite consensus disorder prediction 283 348 - -
Adu09g00743 436 SMART c3hfinal6 400 425 IPR000571 GO:0046872
Adu09g00743 436 SUPERFAMILY CCCH zinc finger 399 424 IPR036855 GO:0046872
Adu09g00743 436 MobiDBLite consensus disorder prediction 1 26 - -
Adu09g00743 436 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEI 14 424 IPR045124 GO:0003723|GO:0045892
Adu09g00743 436 Pfam SAP domain 86 120 IPR003034 -
Adu09g00743 436 MobiDBLite consensus disorder prediction 291 348 - -
Adu09g00743 436 SUPERFAMILY SAP domain 75 121 IPR036361 -
Adu09g00743 436 ProSiteProfiles Zinc finger C3H1-type profile. 400 426 IPR000571 GO:0046872
Adu09g00743 436 Gene3D - 355 433 - -
Adu09g00743 436 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 62-LIKE 14 424 - -
Adu09g00743 436 Pfam CCCH-type zinc finger 404 424 IPR041367 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g00743 Adu-Chr9 10456614 10460236 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Adu09g00743 SAP 7.5e-07 CL0306
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g00743 - - ahf:112777670 835.869