Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g00701 ATGAATGTGATTGATCGATGCTGGAGACGAGATCCCCAATGGAGGACCCACCGCGTGCAACTGGCGAACTGCTCCATTGGCTATGCTGGCAAGATGATGAACAACATTGGCAGTGACCTCATCTATTATGAAGTTATAGATACTAGTGATGACCCCATAAACCCTAAGCCTGGTACCTTGCGATATGGAGCTTCTGTGATTCAACAAAAAGTTTGGATCACATTTAAAAGTGACATGAAAATTACATTGGCAAAACCCCTTCTTATTAGTAGCTTTACCGCCATTGATGGCCGCGGCGCCAACGTCCATATTGCTCATAACGCATGCTTTATGATCTTTAAGGCGACGAACGTAATAATCCACAATGTTCGGATCCATGATTGTAAAGCACAAGCTCCGGGTTTGGTGATGGGTCCAAATGGGAAGGTGATTTCATTGGGTCAAGTTGATGGCGATGCCATTAGACTAGTCACTGCTTCAAAGATTTGGATTGATCATAATACACTTCAAGATTGCGAAGATGGTCTTCTTGATGTTACACGGGGTTCCACTGATGTCACCATCTCCAATAACTGGTTCCGGAACCAAGATAAGGTTATGCTTCTTGGCCATGATGATGGATATATTAGAGACCAGAATATGAAAGTTACTGTTGTGTACAATCATTTTGGACCAAATTGTAACCAGCGTATGCCAAGGATCCGTCATGGATATGCACATGTAGCAAACAATCTTTATCAGGGATGGATGCAATATGCTATTGGTGGAAGCATGGGACCTAGCCTCAAAAGCCAATCTAATCTCTTTATAGCACCCGAATCTGGGAACAAGGAGGTGACATGGAGAAAAGGCAACAGCGAAAATGGGAACATGTGGGAATTCCATTCAGTTGGGGATGCTTTTGAAAATGGAGCTTCTTTCACGGTAACAAAAGGAGGACGTGTGCCAAAGCCAAATTATAGTGAGGAACAATATTTTAAGGTTCTTGATGTTAAATCTGTCAGATTTTTGACAAGATCCTCTGGCGTACTATGA 1035 0.4271 MNVIDRCWRRDPQWRTHRVQLANCSIGYAGKMMNNIGSDLIYYEVIDTSDDPINPKPGTLRYGASVIQQKVWITFKSDMKITLAKPLLISSFTAIDGRGANVHIAHNACFMIFKATNVIIHNVRIHDCKAQAPGLVMGPNGKVISLGQVDGDAIRLVTASKIWIDHNTLQDCEDGLLDVTRGSTDVTISNNWFRNQDKVMLLGHDDGYIRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWMQYAIGGSMGPSLKSQSNLFIAPESGNKEVTWRKGNSENGNMWEFHSVGDAFENGASFTVTKGGRVPKPNYSEEQYFKVLDVKSVRFLTRSSGVL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g00701 344 Pfam Pectate lyase 91 269 IPR002022 -
Adu09g00701 344 PRINTS Pollen allergen Amb family signature 292 316 IPR018082 -
Adu09g00701 344 PRINTS Pollen allergen Amb family signature 86 102 IPR018082 -
Adu09g00701 344 PRINTS Pollen allergen Amb family signature 230 249 IPR018082 -
Adu09g00701 344 PRINTS Pollen allergen Amb family signature 323 344 IPR018082 -
Adu09g00701 344 PRINTS Pollen allergen Amb family signature 24 41 IPR018082 -
Adu09g00701 344 PRINTS Pollen allergen Amb family signature 150 171 IPR018082 -
Adu09g00701 344 PRINTS Pollen allergen Amb family signature 252 271 IPR018082 -
Adu09g00701 344 Gene3D - 1 344 IPR012334 -
Adu09g00701 344 PANTHER PECTATE LYASE 18-RELATED 1 344 IPR045032 GO:0030570
Adu09g00701 344 PANTHER PECTATE LYASE 1 344 - -
Adu09g00701 344 SMART amb_all 78 275 IPR002022 -
Adu09g00701 344 SUPERFAMILY Pectin lyase-like 2 318 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g00701 Adu-Chr9 9738837 9740303 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g00701 32 284 Polysaccharide Lyase AT5G09280 71.937 1.03e-143 406
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g00701 K01728 - gmx:100780437 607.06