Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g00562 ATGGGTAATCAGAAGCAAAAGTGGACGCAAGACGAAGAAGACGCGCTCATAGCCGGCGTGGAAAAACACGGTCCAGGGAAGTGGAAGAACATTCTCAAAGACCCCCAGTTTGCACCATTTCTCACTTCACGTTCCAATATCGACCTCAAGGATAAATGGCGAAATTTGAGTGTTAGCAATGGCACTCAAGGATCTAAGGAAAAATCTAGGGTTCCTAGAATCAAGGGTGGGGCCCCTATTGCTGCTTCCCCAGTTGCTGCTGCTGCTAGTAATGCCATTGTTGTTGCCGGGGAAGATGCTACTATTGTCACCACTATGATTCATCAACCTGATCCTTCTGTTGCTGTGGGTGATTCCTCTCAAAATGACGAAGATGCCAAGAATCGTCCGAGGTACAATGCAATGGTTTTAGAAGCTCTGTCAGCTTTGAAAGATGCTAATGGATCTGACCTGAATGCCATTGTTAACTTTATTGAGATATGGGGTGGGAATTTTTGGCATATGATTAGTCAAGGGAAACTTGAAAAGGTACAAAACTGTTACAAGATTAAAAAGGACTATTCACCTGTGCCAAAATCACCAGTTGCTGTGAAAAAGAATGTGTGGCCACAACGGCAACAACCACCACCACCCCCCGAGTTTGTGGCATCTAATGAGACAATAAAGGAAGCTGCTGAAACTGCAGCCTACAGAATTGCCGAGGCCGAAAGCAAGTCATATTTAGCCGCCGAAGCAGTCAAGGAGGCAGAACGAATTGCACGCTTAGCTGAAGATGCTGAGGCGATGTTACAGCTAGTACAACAGATTTATGATGCTTGTTCGCGTGGTGAAGCTGTCATCTTGGCATCTTAA 852 0.4554 MGNQKQKWTQDEEDALIAGVEKHGPGKWKNILKDPQFAPFLTSRSNIDLKDKWRNLSVSNGTQGSKEKSRVPRIKGGAPIAASPVAAAASNAIVVAGEDATIVTTMIHQPDPSVAVGDSSQNDEDAKNRPRYNAMVLEALSALKDANGSDLNAIVNFIEIWGGNFWHMISQGKLEKVQNCYKIKKDYSPVPKSPVAVKKNVWPQRQQPPPPPEFVASNETIKEAAETAAYRIAEAESKSYLAAEAVKEAERIARLAEDAEAMLQLVQQIYDACSRGEAVILAS 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g00562 283 Coils Coil 242 262 - -
Adu09g00562 283 SUPERFAMILY "Winged helix" DNA-binding domain 127 194 IPR036390 -
Adu09g00562 283 SUPERFAMILY Homeodomain-like 2 59 IPR009057 -
Adu09g00562 283 PANTHER SINGLE MYB HISTONE 4 1 282 IPR044597 GO:0003691
Adu09g00562 283 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
Adu09g00562 283 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 282 - -
Adu09g00562 283 Gene3D - 2 58 - -
Adu09g00562 283 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Adu09g00562 283 Gene3D - 124 160 IPR036388 -
Adu09g00562 283 SMART sant 4 59 IPR001005 -
Adu09g00562 283 Pfam linker histone H1 and H5 family 130 159 IPR005818 GO:0000786|GO:0003677|GO:0006334
Adu09g00562 283 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Adu09g00562 283 CDD SANT_TRF 6 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g00562 Adu-Chr9 7094726 7096373 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g00562 1 281 Single Myb Histone (SMH) Gene Family AT1G17520 46.128 4.25e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Adu09g00562 Myb_DNA-binding 1.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g00562 K09422 - gmx:778177 323.168