Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g00373 ATGGATGGTCTCAATTGGGATGATGCAACTTCACAAATTGCAAGAAATAACACACCAATCTTATGGAGCAAACAACAACAAAGCCAAGAAATAATTCTTACATACCCAAATTCAGAACATTTGATTAATTATCAGCAGCAAGATGCAGCAACAATAGTGAAATCTTCAGCCATAATGTCACTATCAGAAAATGGACCTTACAACATGGATAATTATTACCAGATAAGTGGTAAGTACATGACAGATTTCAACATGGCCCAACAGCAACATGATCATCATCATCATTGTTTGATTTCATCAGCTACAAATAGCAACACTAATGATGATGATAATGATGGGATTTCAAAGATCTTGTTATCTGATGATGATTGCAAAAACTACTTGTGGAACTTGAGTAGTTCCACTACTGATGCTGCTTCCTCTGCTGAATCTGAAAGCAACAACAATAATAATGATGCTTCTACTATGCTTCCATGCTCTCATCAAAACTCCTCAGATCATCAACAATACATCAACCAAGAAGGACAATTCAATCCTATTATTATCACTAATAAGGATCAATCACCAATTATCAAGATAGAGAATCCACCAAGATCCAAGAAACCCAGATGGGAAAAGACTCCATTTTCATCAACAATAAGTTTCCAAATCCCAAATGAAGCATCAGCAACAATGTCATCAACTTCAACCACTGAAGAAGAAGCTGATCCAGAGGCCATAGCACAAATGAAGGAAATGATATACAGAGCAGCAGCATTCAGGCCGGTGAACTTGTTAGACTCAGATGAAGTGATTGAGAAGCCAAAGAGGAAGAATGTGAGAGTTTCAAGTGATCCACAAACTGTGGCTGCAAGGCAAAGAAGAGAGAAAATAAGCCAAAAAATCAGGGTTTTGCAGAAGATTGTTCCTGGTGGAACCAAAATGGACACTGCATCAATGCTTGATGAAGCTGCAAATTATCTTAAGTTTTTAAGGTCACAGGTTAAGGCACTTGAAAATTTAGGGAACAACACTACTAAAGTTGAAGCAATGGATTATAATAATTATAATAGTTTTGTATTCTCTTTCAACCCTTCCTTCCATTCTCAAATTCATTTTTGA 1101 0.3651 MDGLNWDDATSQIARNNTPILWSKQQQSQEIILTYPNSEHLINYQQQDAATIVKSSAIMSLSENGPYNMDNYYQISGKYMTDFNMAQQQHDHHHHCLISSATNSNTNDDDNDGISKILLSDDDCKNYLWNLSSSTTDAASSAESESNNNNNDASTMLPCSHQNSSDHQQYINQEGQFNPIIITNKDQSPIIKIENPPRSKKPRWEKTPFSSTISFQIPNEASATMSSTSTTEEEADPEAIAQMKEMIYRAAAFRPVNLLDSDEVIEKPKRKNVRVSSDPQTVAARQRREKISQKIRVLQKIVPGGTKMDTASMLDEAANYLKFLRSQVKALENLGNNTTKVEAMDYNNYNSFVFSFNPSFHSQIHF 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g00373 366 Gene3D - 280 345 IPR036638 GO:0046983
Adu09g00373 366 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 365 IPR045843 GO:0003700|GO:0006355
Adu09g00373 366 SMART finulus 281 330 IPR011598 GO:0046983
Adu09g00373 366 CDD bHLH_AtIND_like 276 334 - -
Adu09g00373 366 Pfam Helix-loop-helix DNA-binding domain 285 324 IPR011598 GO:0046983
Adu09g00373 366 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983
Adu09g00373 366 PANTHER TRANSCRIPTION FACTOR BHLH87 1 365 - -
Adu09g00373 366 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 280 333 IPR036638 GO:0046983
Adu09g00373 366 Coils Coil 314 334 - -
Adu09g00373 366 MobiDBLite consensus disorder prediction 139 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g00373 Adu-Chr9 4178123 4180560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g00373 75 360 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 43.827 2.84e-59 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu09g00373 HLH 4.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g00373 - - aip:107616571 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu09g00373 09 4178123 4180560 Adu09g00373 09 4178123 4180560 ECH
Adu07g01754 07 52690699 52692594 Adu09g00373 09 4178123 4180560 PCT