Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g00320 ATGATGGATGATAGTAGAAGAAGGAGAAGAAGCAGCCACAACAAGTTTTCAGAGGAAAAGGAACTAGAACTAAGACTTGGTCCACCTGGTGAAGAAGAAGAAGAAGATGAAGAAAAAGATGAAGATTATTGGTCTCATCACAATGAAAACAAGAGAGAAAGAAACAGTGATGAATCAGATCAATCACCACTCTCTCTTGGTTACTTCTCATCCCAGAGAATTTACAACTACCACCAGGACCAGGCTACTAAGGCTAAAGCTTCATCATTTCTTCAGAACATGTCAATGGTGGGAAAGGAATCAAAGGATGCAATATCATCATCACAACCATGTCGTTCTGAAGTGATAGAGTTTCATAATGGTGCAGTCTGTGCAGAGAAGAAAGCATTATCATCACCTTCTTCTGCAAATACAGCTGCCCCCAACAGCTCTCAGAAAAGAAGTGCAGCTGGTCCAGTAGTGGGTTGGCCTCCAATTCGTTCATTCAGGAAGAACAATGCAAGTGGAAGCACTTTTTCTAAGCCCCCTCTTGGGTCCCACCACAACCATCATCATCATCTTAATCTTAATGTGGAAGACAAGGCTGCTAATAATACTATTAATAAGGAACATGTTAACAACATTAGTGGTCCTCCTAATAAAGGCATGTTTGTGAAGATCAATATGGATGGAATTCCAATTGGGAGAAAAGTGGATATTAATGCTTATGGCAGCTATGACAAACTTTCCTCTGTTGTTGACCACCTCTTTAGAGACCTCCTTTCAGCTCAAAGAAGAGATTCGTGTGGTGGTGGAAGTATTGAAAAGCAAAATCAAGAGGAAGAGAAAACAATGATAACAACAGGTGTATTAGATGGAAGTGGGGAATATACTCTTATTTATGAAGATAATGAAGGAGACAAGATGCTTCTTGGGGATGTCCCATGGCACATGTTTGTATCAACAGTGAAGAGATTGCGAGTGTTGAAGAAATCTGATCTTGCAGCTCTTTCACTTGGTGGTAAGCAAGGCCACATACACCACTCAAAATGA 1032 0.405 MMDDSRRRRRSSHNKFSEEKELELRLGPPGEEEEEDEEKDEDYWSHHNENKRERNSDESDQSPLSLGYFSSQRIYNYHQDQATKAKASSFLQNMSMVGKESKDAISSSQPCRSEVIEFHNGAVCAEKKALSSPSSANTAAPNSSQKRSAAGPVVGWPPIRSFRKNNASGSTFSKPPLGSHHNHHHHLNLNVEDKAANNTINKEHVNNISGPPNKGMFVKINMDGIPIGRKVDINAYGSYDKLSSVVDHLFRDLLSAQRRDSCGGGSIEKQNQEEEKTMITTGVLDGSGEYTLIYEDNEGDKMLLGDVPWHMFVSTVKRLRVLKKSDLAALSLGGKQGHIHHSK 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g00320 343 MobiDBLite consensus disorder prediction 41 59 - -
Adu09g00320 343 MobiDBLite consensus disorder prediction 163 177 - -
Adu09g00320 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 337 IPR003311 GO:0005634|GO:0006355
Adu09g00320 343 SUPERFAMILY CAD & PB1 domains 209 321 - -
Adu09g00320 343 MobiDBLite consensus disorder prediction 129 184 - -
Adu09g00320 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 8 337 - -
Adu09g00320 343 MobiDBLite consensus disorder prediction 1 27 - -
Adu09g00320 343 MobiDBLite consensus disorder prediction 130 149 - -
Adu09g00320 343 Pfam AUX/IAA family 21 330 IPR033389 -
Adu09g00320 343 ProSiteProfiles PB1 domain profile. 215 324 IPR000270 GO:0005515
Adu09g00320 343 MobiDBLite consensus disorder prediction 1 65 - -
Adu09g00320 343 Gene3D - 211 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g00320 Adu-Chr9 3386220 3392683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g00320 219 335 B3 DNA Binding Superfamily AT4G23980 29.915 6.39e-12 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Adu09g00320 AUX_IAA 8.2e-66 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu09g00320 09 3386220 3392683 Adu07g01763 07 52874885 52876459 ECH
Adu09g00320 09 3386220 3392683 Adu09g00320 09 3386220 3392683 ECH
Adu07g01763 07 52874885 52876459 Adu09g00320 09 3386220 3392683 PCT