LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu09g00262	ATGCCTGCCATAGCATTCGGGCGTTTTGATGATTCTTTCAGCTTTGGCTCCATCAAAGCCTACATTGCTGAGTTCATCTCAACATTGATCTTTGTTTTTGCTGGTGTTGGTTCAGCAATAGCCTATGGAAAGCTGACATCAGATGCAGCACTTGACCCTGCTGGATTGGTAGCAGTAGCTGTGTGCCATGGATTTGCTCTGTTTGTGGCGGTTTCTGTTGGAGCCAACATCTCTGGTGGCCATGTCAACCCTGCTGTCACTTTTGGTTTGGCACTTGGAGGCCAAATCACACTACTTTCTGGAATCTTCTACTGGATTGCTCAGCTTCTTGGTTCCATTGTTGCATGTTTCCTCCTTTCTTATGTCACCGGTGGATTGACAACTCCAATCCATACAGCTGACCCCAAGAAGGGCTCACTAGGCACCATTGCACCCATTGCAATTGGTTTCATTGTTGGTGCCAACATCTTGGCCGCCGGTCCCTTCTCCGGCGGCTCCATGAACCCGGCTCGCTCCTTCGGCCCTGCCGTCGTCAGCGGCAACTTCCATGACAACTGGATCTACTGGGTTGGACCCCTCATTGGTGGTGGCCTTGCTGGCCTTGTCTATGCCAATGTCTTCTTGCCCTCTGACCATGCACCTCTTTCAAGTGAATTTTGA	660	0.5045	MPAIAFGRFDDSFSFGSIKAYIAEFISTLIFVFAGVGSAIAYGKLTSDAALDPAGLVAVAVCHGFALFVAVSVGANISGGHVNPAVTFGLALGGQITLLSGIFYWIAQLLGSIVACFLLSYVTGGLTTPIHTADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGNFHDNWIYWVGPLIGGGLAGLVYANVFLPSDHAPLSSEF	219

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu09g00262	219	Pfam	Major intrinsic protein	16	126	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Adu09g00262	219	Pfam	Major intrinsic protein	131	203	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Adu09g00262	219	Gene3D	Glycerol uptake facilitator protein.	131	216	IPR023271	-
	Adu09g00262	219	Gene3D	Glycerol uptake facilitator protein.	2	130	IPR023271	-
	Adu09g00262	219	PANTHER	AQUAPORIN-8	1	132	IPR034294	-
	Adu09g00262	219	PANTHER	AQUAPORIN-8	133	219	IPR034294	-
	Adu09g00262	219	SUPERFAMILY	Aquaporin-like	13	212	IPR023271	-
	Adu09g00262	219	ProSitePatterns	MIP family signature.	81	89	IPR022357	-
	Adu09g00262	219	PRINTS	Major intrinsic protein family signature	19	38	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Adu09g00262	219	PRINTS	Major intrinsic protein family signature	63	87	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Adu09g00262	219	PRINTS	Major intrinsic protein family signature	186	206	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Adu09g00262	219	PRINTS	Major intrinsic protein family signature	149	171	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Adu09g00262	219	PANTHER	MIP PROTEIN	1	132	-	-
	Adu09g00262	219	PANTHER	MIP PROTEIN	133	219	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu09g00262	Adu-Chr9	2795606	2797520	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu09g00262	1	217	Major Intrinsic Protein MIP	AT3G16240	70.040	9.14e-118	333

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu09g00262	K09873		-	rcu:8273814	380.948

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu09g00262	09	2795606	2797520	Adu09g00262	09	2795606	2797520	ECH