Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu09g00193 ATGACTAAGGTCTCTCGTCCAAACAAAAACCCTAAATCCCAAAACACTAATCCCGTTATAAAACGAAGAAAGATCACCAAAAAGAAGAAGGTCGATTCCATCAACGCCAACACCAACAGTGAACCATTCTTTTGCACAATCTGCACCAAGACCAAAACAAAAAAGAAATCTTTTACCACAGTCAGTTGCAACCACTCACTCTGTACAACTTGCATGGTAAGGTACGTTTCTTCTCAGGTTCATCGCGTTAAAATTCCTTGTCCGATTTGCATGGACTGTTATTTGAATGTAGAGGATTGCCGCAATATTCTTCCAAATAAGATTTTCGATCTGTGGGAAAAATTATTGTGTGAAGCAGCGATACCTGAGGCTGACAAATTCTATTGTCCCTTTAAGGACTGTTCTGCGCTCATGATCGATGATGGTGAGTGCAGAAAATTGGCCAGAAAATTTAAGTGTCCTCATTGTGATAGAATGTTTTGTGCACAGTGCAAGGTTGCTTGGCACCATGGAATCAGGTGCAAGGGGTTTCAGGGCAGTAATGGGGATGTTATGATGATGGGGTTGGCGAAGGAAAAGAGTTGGCAGAGGTGTCCTAATTGCAAGTTATACGTTGAGAAAAATGGTGGGTGCAAATCCATGTATTGTAGGTGTGGAGAGAATTTCTGTTATATATGTGGAATTAATCCCAAAAAATGCTCTTGTACAACTTAG 714 0.4076 MTKVSRPNKNPKSQNTNPVIKRRKITKKKKVDSINANTNSEPFFCTICTKTKTKKKSFTTVSCNHSLCTTCMVRYVSSQVHRVKIPCPICMDCYLNVEDCRNILPNKIFDLWEKLLCEAAIPEADKFYCPFKDCSALMIDDGECRKLARKFKCPHCDRMFCAQCKVAWHHGIRCKGFQGSNGDVMMMGLAKEKSWQRCPNCKLYVEKNGGCKSMYCRCGENFCYICGINPKKCSCTT 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu09g00193 237 ProSiteProfiles TRIAD supradomain profile. 41 237 IPR044066 -
Adu09g00193 237 MobiDBLite consensus disorder prediction 1 20 - -
Adu09g00193 237 SUPERFAMILY RING/U-box 113 177 - -
Adu09g00193 237 Pfam Zinc finger, C3HC4 type (RING finger) 45 90 IPR018957 GO:0046872
Adu09g00193 237 Gene3D - 180 237 - -
Adu09g00193 237 SUPERFAMILY RING/U-box 39 123 - -
Adu09g00193 237 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 11 235 IPR031127 GO:0004842|GO:0016567
Adu09g00193 237 SMART ibrneu5 110 174 IPR002867 -
Adu09g00193 237 MobiDBLite consensus disorder prediction 1 21 - -
Adu09g00193 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 38 125 IPR013083 -
Adu09g00193 237 SUPERFAMILY RING/U-box 184 231 - -
Adu09g00193 237 ProSiteProfiles Zinc finger RING-type profile. 45 90 IPR001841 -
Adu09g00193 237 Pfam IBR domain, a half RING-finger domain 113 174 IPR002867 -
Adu09g00193 237 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 11 235 - -
Adu09g00193 237 ProSitePatterns Zinc finger RING-type signature. 63 72 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu09g00193 Adu-Chr9 2052828 2053541 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu09g00193 32 227 C3H Transcription Factor Family AT2G19610 31.193 1.79e-22 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu09g00193 K11975 - aip:107614633 254.218