Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02901 ATGAAGAAGAGACAGGTGGCGGTGAAGACTTCGTCGACGGTGATAAGGAACGTAAGGTACGGGGAGTGCCAGAAGAATCACGCGGCCAATATCGGAGGGTACGCGGTGGATGGGTGCAGGGAGTTCATGGCCAGTGCAGGGGAAGGAACCAACGGCGCTCTCACGTGTGCTGCTTGTGGCTGCCACCGCAACTTCCACCGCAGGGAAGTGCAAACTGAGGTTGTCTGCTGGACGGCCAGGATGACGACCGAAGAGGGAGAAAGACGCTGA 270 0.5852 MKKRQVAVKTSSTVIRNVRYGECQKNHAANIGGYAVDGCREFMASAGEGTNGALTCAACGCHRNFHRREVQTEVVCWTARMTTEEGERR 89
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02901 89 Pfam ZF-HD protein dimerisation region 17 70 IPR006456 -
Adu08g02901 89 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 2 76 - -
Adu08g02901 89 PANTHER MINI ZINC FINGER PROTEIN 3 2 76 - -
Adu08g02901 89 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 19 70 IPR006456 -
Adu08g02901 89 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 20 69 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02901 Adu-Chr8 45487638 45489829 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02901 1 76 Zinc finger-homeobox gene family AT1G18835 73.171 3.71e-35 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Adu08g02901 ZF-HD_dimer 7.5e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02901 - - gmx:100785967 144.436