Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02883 ATGGGAAGGTCTCCTTGCTGCAGCCATGAGCATGTGAGGAAGGGTGCTTGGTCTCTTGAAGAAGATGAGAAGCTGAAAGCATACATTTACACTTATGGCCCTGGAAGCTGGCGCACCTTGCCCGACAAAGCTGGCCTTGAAAGATGTGGAAAGAGTTGCAGACTGAGGTGGTTTAACTACCTCAGACCTGGCATTAAGAGAGGCCGATTGAGCAGAGATGAGGAGCAGACCATCCTAAGACTCCATGCACTTCTTGGCAACAGGTGGTCCGCTATTGCCAAGCACTTGCCTAATCGAACTGACAACGAGATCAAGAACTACTGGAACTCTTCTCTCAACAAGAACAACCACTTATTACACACTCCTCCGCATCACCAGCAGCAGCAGCTTCATGTGCCATGCTTACTCAACAAAATGGCCAATTCCTTCTCTGGCAACCAAGCTGCAAAAGCACTCTTCTCCAAGCTAATGAATGGTGACGAAAAGGGTGAGGCTATTCAAGCCTCTTCTGTTCCAGCAGATCATCACAGTTGGCACTGCGCTGAGTCCTGTAATTCTACATTGAGCTTTCTAGATGACACCATTGCAGAAGCTCCTGAATTTATTCAAATGTTAAGACGAAAGTGA 627 0.4753 MGRSPCCSHEHVRKGAWSLEEDEKLKAYIYTYGPGSWRTLPDKAGLERCGKSCRLRWFNYLRPGIKRGRLSRDEEQTILRLHALLGNRWSAIAKHLPNRTDNEIKNYWNSSLNKNNHLLHTPPHHQQQQLHVPCLLNKMANSFSGNQAAKALFSKLMNGDEKGEAIQASSVPADHHSWHCAESCNSTLSFLDDTIAEAPEFIQMLRRK 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02883 208 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Adu08g02883 208 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Adu08g02883 208 CDD SANT 16 61 IPR001005 -
Adu08g02883 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Adu08g02883 208 Gene3D - 70 132 - -
Adu08g02883 208 Gene3D - 14 66 - -
Adu08g02883 208 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Adu08g02883 208 CDD SANT 71 112 IPR001005 -
Adu08g02883 208 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Adu08g02883 208 SMART sant 66 114 IPR001005 -
Adu08g02883 208 SMART sant 13 63 IPR001005 -
Adu08g02883 208 PANTHER TRANSCRIPTION FACTOR MYB106 1 114 - -
Adu08g02883 208 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 114 - -
Adu08g02883 208 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Adu08g02883 208 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02883 Adu-Chr8 45275607 45277708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02883 1 114 MYB Transcription Factor Family AT3G01140 71.930 7.18e-57 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu08g02883 Myb_DNA-binding 1.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02883 K09422 - gmx:100818639 191.43