Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02874 ATGCATCTTCTTCTTCTTCTTCTTCATGGCTGCTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCAAAGACTATGTCTGGGAAAAAGAATCAGACGGCTTGCCGTGGGACACACTTCGCCATGTTTACGAGCTTGTGCAGAGTGGCAATGAATCATTTCGAGAGAATAGAATGGAAGAGGCAATCAGCTTTTATTCGCGAGCCAATAACATTAAATCTGGTGATATGGTCATCCTAGGCAATCGCTGTGCAGCTTATATTAGGATTAGTCAATATTTGAAGCATAGAACTCCATCGGCTTCGGAACATAGACCATTGAGTGGGCTTGATCCTACAACCCTTGCTGAACTGGGTTTGAAGGATGCTGAGAAGCTTGTTGACCTGCAAAGTAATTCAGCAAATCCTTACATTTTAAAGGCCCATGCACTTCTTTTGTTGGAGAAATATGAGAAAGCCAGGGATGTTATTCTTTCCGGTCTACAAGTCGATCCATTTAGCAATCCTCTTCAAGCTTCTCTTCAAAATTTGGAAAGACTGCCATCTCATTCAACAAGGATGAATAGACATGCACAACCAGAGCGAAATGATGAGTTTGATTGCACTCTCTGCCTGAAGTTGCTGTATGAACCTGTTACAACCCCTTGTGGACATTCCTTTTGCCGTTCATGTCTATTTCAGTCAATGGATTCTGGGAACAGATGCCCTTTGTGCAGGACAGTTCTGTTTATTAGTCCAAGAACATGTTCAATCAGTGTGACATTGAAGAACATCATAGAGAAGAACTTTCCTGAGGAGTATGCAGAACGGAAACAAGAGCATGACAGTTTAATCAACCCTGGTGTAGATTTGCTGCCCCTCTTTGTTATGGATGTTGTCATACCATGTCAAAAGTTTCCGCTCAATATATTTGAACCTCGGTATAGATTGATGGTAAGAAGAATAATGGAAGGCAATCATCGGATGGGAATGGTTATCACTGATTCTTCAACAGGTTCTTTAGCCGAGTATGGCTGTGAAGTGGAAATCACTGAGTGTGAGCCACTTCCAGATGGTCGTTTCTATATAGAGATTGAAAGTCGCAGGAGATTTCGCATCATCTGTTCATGGGATCAGGATGGGTATCGTGTTGCTCAGGTTGAATGGGTTCAGGATATTATGCCAGCAGAAGGGACAAAAGAAAGAGAGATTTTACAGGAATTGACATGTAATGCAGCAGAAAATGCTCGATCATGGATAAGAAGAGCTAGAGAAGCAACAAGACTAGATCCAAGAAGAATCGAGAGACTCCTGAATGTTGAAGCAATGATGCCGTCGACACGAGACCCTGAGCGTTTCAGTTTTTGGCTGGCTACCCTATCAAACCGAAGGCCTTCGGACAGATTGGATCTCCTTCGCATAAGAGATACCACAGAGAGGATTAGACGAGGCCTTATATTTCTTAGAGCAGAGGAACAAGGCTGCAGAATTCAGTAA 1500 0.4133 MHLLLLLLHGCSXXXXXXXXXXXXXXXXXXVKDYVWEKESDGLPWDTLRHVYELVQSGNESFRENRMEEAISFYSRANNIKSGDMVILGNRCAAYIRISQYLKHRTPSASEHRPLSGLDPTTLAELGLKDAEKLVDLQSNSANPYILKAHALLLLEKYEKARDVILSGLQVDPFSNPLQASLQNLERLPSHSTRMNRHAQPERNDEFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDSGNRCPLCRTVLFISPRTCSISVTLKNIIEKNFPEEYAERKQEHDSLINPGVDLLPLFVMDVVIPCQKFPLNIFEPRYRLMVRRIMEGNHRMGMVITDSSTGSLAEYGCEVEITECEPLPDGRFYIEIESRRRFRIICSWDQDGYRVAQVEWVQDIMPAEGTKEREILQELTCNAAENARSWIRRAREATRLDPRRIERLLNVEAMMPSTRDPERFSFWLATLSNRRPSDRLDLLRIRDTTERIRRGLIFLRAEEQGCRIQ 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02874 499 Pfam Zinc finger, C3HC4 type (RING finger) 209 246 - -
Adu08g02874 499 SMART ring_2 209 246 IPR001841 -
Adu08g02874 499 SUPERFAMILY RING/U-box 203 272 - -
Adu08g02874 499 ProSitePatterns Zinc finger RING-type signature. 224 233 IPR017907 -
Adu08g02874 499 Pfam ATP-dependent protease La (LON) substrate-binding domain 293 489 IPR003111 -
Adu08g02874 499 SUPERFAMILY TPR-like 51 180 IPR011990 GO:0005515
Adu08g02874 499 SUPERFAMILY PUA domain-like 293 489 IPR015947 -
Adu08g02874 499 PANTHER 43KDA POSTSYNAPTIC PROTEIN-RELATED 30 492 - -
Adu08g02874 499 SMART lon_5 292 491 IPR003111 -
Adu08g02874 499 Gene3D Tetratricopeptide repeat domain 49 187 IPR011990 GO:0005515
Adu08g02874 499 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 287 IPR013083 -
Adu08g02874 499 ProSiteProfiles Zinc finger RING-type profile. 209 247 IPR001841 -
Adu08g02874 499 PANTHER RING FINGER PROTEIN 127 30 492 - -
Adu08g02874 499 ProSiteProfiles Lon N-terminal domain profile. 290 491 IPR003111 -
Adu08g02874 499 Gene3D - 291 393 IPR046336 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02874 Adu-Chr8 45236515 45242393 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02874 207 254 C3H Transcription Factor Family AT2G42030 41.509 9.75e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02874 - - gmx:100802277 764.222
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g02874 08 45236515 45242393 Adu08g02874 08 45236515 45242393 ECH