Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02863 ATGCATAAAACAAGAATGTTCAGAAGGGGAAATTTGAAGGGTAAATTTGGAAATGATGACAAGCATGTGACAGCAGTTGCAGCTGCTGCATTTTCCATTCATTCAATAGAACAAGCTGCTGCTGCCAACATGATTTCAAGGCCTCAATCCACGAGAAGGAAAAACCATAGCACCTTATCTGAACGACCGACTTATGGCGGGGATACTTCAGTGGAAAGATCATCATTTGGAGAAGATGGAAGGAGAAAACAAGGAAGTGCTCCTGTAAGAGGTTCAAGTGATGATATATCTTCTAAAAGGACTGTGCCCCAAACACAAGGGCACCAAAAACAAATAGGGATTCCGATACAACACAACAACAAAGCAAATGCAGAAGCTTGGGAAAAGGCCAAGTTAAAAAAGATTCAAAAGCGCTATGAGAAGATAAAGTCCCAAATCCTTTCTTGGGAAAGAGAGAAAAAAATTCATGCCAAAATGCATATGGAAATGAAGAAGAATGAATTGGAGAAAAGAAGAATAGTGACAACACAACATTATAATAATAAGATAGCAAGCATAGATAAGGTAGCACAAGGACCATGTAGTGCCCCAACTTATGTGTTCCAAAGGGCCAATAATTATGATGAGATTGCAGAGCTGACATGGGAAAATGGGCAGATATCAATGCATGGGCTCAGTGGGCTTGATCCAACTTCACAAAAAAAGCCAACATGGGTTAATAGGGCCCATGATACATTAGAGTCCATTGTTCAACAAGCCACATGCAAGAATAAAAAGTCAAAGTTGACCATAAAAGACAACCATGCTTATGTTGATGTTCCTACCACAACAAGCTCCATTGTTGCATCTTCAGGGGAACATCATCAAATGGTGCCAACACTTTCAAGGAAAAGATCACATTCTTCTTATTCCGATCAACAACAACATCGGAGAGATGTTAATTATGTTAGCATCAATAATACTAATAGGAAATGTGGTGTTGCTACTGCTAGTGTCACATTTTGTAGGGACAACAATGACGTCACAACCATGATGACGTGGCCTTCTCTTGACTCTGGTCCAAGAAGCTTAAAAAATGATAAGATTCTTGAGGAGGATTCTGCTTGTCAAAGTGGATCGGAAGTTCGGAATAATGAAAATGATAGAGATGGTGGGAAAGGTGAAACAGGGCAGAGCAAATCATCATCAGTTAGAAGAAGAGATAGAATTAATCAGAAGATGAAAGCATTGCAGCGATTAGTGCCTAATGCAAATAAGACAGACAAAGCTTCAATGTTGGATGAGGTGATTAAGTACTTGAAACAACTTCAAGCACAGATAGAAATGATGATGAGTGTGAGCATGCCACAAATGATAATGCAACAACAACTTCAAATGTCTATGCTAGCAAGATCAATGGCAAACAATGCTCCAAATCCAATTAGGCCATTGTTTCCACAACTCATCCAACCAACAACAACAATTGGAGCTGCTAACACTGCCTCTGCTCCAATGTTTCTTGCACCTTCCTTGATGATTCCTTCAAGCACCAATGCTTCAATTCCTCTGCCTTCTGCTTCATATGGGGCTGCTACTTTTGCACAACCACTTAATATGGATATGTTGAACAACATGGCAGCATTTTACAGCCAACAGATGAATCATCATCAGAACAATCAAATCAAACCATAA 1671 0.3962 MHKTRMFRRGNLKGKFGNDDKHVTAVAAAAFSIHSIEQAAAANMISRPQSTRRKNHSTLSERPTYGGDTSVERSSFGEDGRRKQGSAPVRGSSDDISSKRTVPQTQGHQKQIGIPIQHNNKANAEAWEKAKLKKIQKRYEKIKSQILSWEREKKIHAKMHMEMKKNELEKRRIVTTQHYNNKIASIDKVAQGPCSAPTYVFQRANNYDEIAELTWENGQISMHGLSGLDPTSQKKPTWVNRAHDTLESIVQQATCKNKKSKLTIKDNHAYVDVPTTTSSIVASSGEHHQMVPTLSRKRSHSSYSDQQQHRRDVNYVSINNTNRKCGVATASVTFCRDNNDVTTMMTWPSLDSGPRSLKNDKILEEDSACQSGSEVRNNENDRDGGKGETGQSKSSSVRRRDRINQKMKALQRLVPNANKTDKASMLDEVIKYLKQLQAQIEMMMSVSMPQMIMQQQLQMSMLARSMANNAPNPIRPLFPQLIQPTTTIGAANTASAPMFLAPSLMIPSSTNASIPLPSASYGAATFAQPLNMDMLNNMAAFYSQQMNHHQNNQIKP 556
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02863 556 MobiDBLite consensus disorder prediction 281 312 - -
Adu08g02863 556 PANTHER TRANSCRIPTION FACTOR PIF7 175 552 - -
Adu08g02863 556 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 175 552 IPR031066 -
Adu08g02863 556 MobiDBLite consensus disorder prediction 281 301 - -
Adu08g02863 556 MobiDBLite consensus disorder prediction 376 401 - -
Adu08g02863 556 MobiDBLite consensus disorder prediction 90 118 - -
Adu08g02863 556 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 398 449 IPR036638 GO:0046983
Adu08g02863 556 Pfam Remorin, C-terminal region 120 192 IPR005516 -
Adu08g02863 556 Coils Coil 132 152 - -
Adu08g02863 556 Pfam Helix-loop-helix DNA-binding domain 398 437 IPR011598 GO:0046983
Adu08g02863 556 MobiDBLite consensus disorder prediction 366 401 - -
Adu08g02863 556 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 387 436 IPR011598 GO:0046983
Adu08g02863 556 MobiDBLite consensus disorder prediction 43 119 - -
Adu08g02863 556 SMART finulus 394 442 IPR011598 GO:0046983
Adu08g02863 556 Gene3D - 393 445 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02863 Adu-Chr8 45126996 45144383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02863 209 449 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 33.721 2.82e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu08g02863 Remorin_C 5.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02863 - - aip:107624044 647.891