Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02862 ATGGGTCTAACAGAAGAACAGAGGCAACAAATCGAAGCAAATCGTCAAGCCGCTCTCGCCAAACGCAAAGCATTTCTTGAATCCCAACAACAACAACAACAACAACTACTTTTCAAATGCCAGAAGCTCTCTCATTCTCGCTACTCTTCTTCAACATCCAAACCCGCCCTTATTCCAAAGTTCGTTGCCAGGCTCGAAATATGCTCTCCAGATTCCTTCTCCGTCATGCCTATCCCCTCCGACGACGACAACTTCTCCGCCCTCAACGGCCTCCTCTCCGACCTCCTCCCCTCTCACTTCACTCAGATCTCCACCGCCGTTGCCGATGCCTCTGTCTACCACCTCTCCGACTACCTCCGCGTCCTCAACTGCCTCAAGGCAGCATCTCACCAGATTGCTGACGTGGAGGACATTCCCTGGAACACGCTCAAAGCCGTTGAGACCATGATGCTGGCGTCTGGTGGTGGCGGCACCTGGACGCCGACCAGGCCCGAGCATCTCACCGACGAGCAGGTCGAAGACCTCATCGCGAAGCTTCCGAGGAGTTTGGTGGATGCTCTGATGCCGTTTCAGTTGGATGGGATTAGGTTTGGACTCAGAAGGGGTGGAAGGTGCCTCATTGCCGATGATATGGGACTCGGAAAGACCCTCCAGGCGATTGCTATTGCGGGATGTTTCATGCATGAAGGTCCTATACTTGTGGTTTGCCCTGCTGTTTTGCGTTTTTCATGGGCAGAAGAATTGGAACGTTGGCTTCCTTGCTGTTTGCCTGCTGATATTCATGTTGTTTTTGGTCATCAAGATAACCCTGTTCATTTAACAAGATGCCCTAGAGTTGTGGTTATTTCTTATACCATGCTCAATCGTCTAAAGAAGAACATGATTGAACGTGAGTGGGCTCTCCTGATTGTTGATGAATCTCATCATGTGCGATGCACGAAGAAAGCCAAAGAGTCAGGAGAGACACAAGCTGTTCTTGATGTGGCAACAAAAGTCAAGCATATAGTTCTGCTATCAGGAACGCCCTCATTGTCAAGGTTACCATTCGACATTTTTCATCAGATAAATATGTTATGGCCTGGTTTGTTGGGGACAAATAAACGCGAGTTTGCAAAAACCTATTGTGACATGAAATTTTTCATGGGCATCCAAGGAAAAGTGTTTGCGGATTATTCAAAGGGCATTCGGTTGGTGGAGTTGAACGTGTTACTTAAGCAAACTGTTATGATAAGGCGTTTGAAGGAACATGTGATGCTACAGTTACCTCCAAAGCGGCGGCAAATTATAAGACTGTTGTTGAAGAAATCAGATATTGTTGCTGCAAAAACTGCAGTTGGGGCATTGACAATTGATGACCCTGAACGTGCAAGTGAAGACATGCCTCTAGGAAACTCAGATGAAGTTGATGGGGACCTTTCTGTCCAAGAACTTGGGATTGCAAAGCTTTCTGGGTTTCGTGAATGGCTTTCCCTCCATCCACTCATAGCAGGATCGGAGAATTCTAAAAAGATGATAATTTTTGCTCATCACCACAAAGTTCTTGATGGAGTACAGGAGTTTATATGTGAGAAAGGTGTAGGTTTTGTGCGAATTGATGGAAGTACTCTTCCAAGAGATAGGCAATCAGCAGTAGTAGCATTTCGATCATCATCAGAGGTTAAAATTGCGATAATAGGTATTTTGGCAGCAGGTTTTGGACTTGATTTCTCAACAGCACAAGATGTGGTGTTCTTGGAGCTACCTCAGTGCCCAACTGTAATGCTTCAGGCCGAGGATAGAGCTCATCGACGGGGGCAAAAAAATGCAGTTAATGTATACATATTCTGTGCAAAGGATACCTCGGATGAGTTGCGTTGGAAAAACTTGAATAAAAGTTTGCACCGTGTTTCAAAAACAACAGATGGAAAATATGATGCAATGAAGGAGATAGTGGTTGATGATATTTCTTACTTAGAGACATATTTCAAAACTGATAGTTCTGACGAGCAATCTGCACGTGAAAAGGCATTAGTTGAAACACTGTTGGATAAGAAACCTTCCCCAGTAAATTTAAGTGAATCTGAAGTAAAACAAGATGATAAATCTGATGAGCAGGCTTCTTTTGACAATAACTCAATTTCTACTGCTAATATCACGGTGCAGGACAAGAAATCAATTCCAACAGTAGAAGCAGATGACATGCAGCCTGACCATCAACTAGAAACAGATGGACATGGGTCTAGTCATGTTGGTTCTCTGCGTTTTGAGGTGAGCCCATACACTGGTAGGATCCACTTGTATTCTTGCGTTTTGGGTACAGATGCAAGACCGCAGCCACTTTATGAAAATTTCCGACCAGAGGAACTTGAGTTGCTATGTCCTGTTTCTGATGATGAGAAAAAGAAGATAGAAGTTAAATCTGTCAAGGAGAATCCTGTTTATAGGCATTCTCTCATGGAGTTTGCACATGAGTGGAGGAGTTTGAGGCCAATTGAACGCAAGAAGTTACTTGGGAAACCATTACAGCTTCCTTTGGCAGTTGAATTATGCTATTTGAGTGAAAGCAATAACCACAATAACAAGGGGTTATTAAATGGTGGAAGCAAACGACGTATGACACCTTTGGTGGAGGTCTGCCATCCTTTACCCGAAGACGCTGTGTGGAAGAAGGTTTATCTACGAAGTGGCCTTGGTAAGAAGGAAAAAGAATATACTCAAGGCTGGAGTGTGACTGATGAACCACTGTGTAAGCTTTGTCAAAAGCAGTGCATGGGTAAGAATGCCAAGGCACCTGAATTTTTCGAAGACCTGTTTTGTAACCTTGCCTGCTATGAAGAGTATCGCATGAGAACAAGCAACAGATTCTTACGTCAGGAACTTTTCCAAATTGAACATGGTGTCTGCACAAATTGCCTATTGGATTGCCATAAGCTTGTTGAGCACATAAAACCTTTATCATTGGAAAGGCGACGAGAGTACATTGAGAAAGTAGCACCAAAAGTCGCAAAGCGGAAGAAGATGCTTGAGAAGCTTGTCAATGATCCAACTGAAGGCAATGCATGGCATGCTGATCATATAATTCCAGTGTATCAAGGCGGAGGTGAATGCAAACTAGAAAATATGAGGACTCTGTGTGTGGCCTGCCATTATGATGTTACCAAAGAACAGTGTGATGAACGACGCAAAGCAAGAGCAAATGCCAGGAAACACCTAAAATTTGTAATGAATAACCTTAAAAATGGTCTGACGGGCACTACTGTCTCTAATGCTAAGGAGCATGAGGCACAGGAAGGAGATAAGCTCTTTATCAATGTCCCTGGAAGTGCATATTCTCTAGCTGATCCCTCAGAAActttattgatttcaggtttagtgtga 3357 0.4376 MGLTEEQRQQIEANRQAALAKRKAFLESQQQQQQQLLFKCQKLSHSRYSSSTSKPALIPKFVARLEICSPDSFSVMPIPSDDDNFSALNGLLSDLLPSHFTQISTAVADASVYHLSDYLRVLNCLKAASHQIADVEDIPWNTLKAVETMMLASGGGGTWTPTRPEHLTDEQVEDLIAKLPRSLVDALMPFQLDGIRFGLRRGGRCLIADDMGLGKTLQAIAIAGCFMHEGPILVVCPAVLRFSWAEELERWLPCCLPADIHVVFGHQDNPVHLTRCPRVVVISYTMLNRLKKNMIEREWALLIVDESHHVRCTKKAKESGETQAVLDVATKVKHIVLLSGTPSLSRLPFDIFHQINMLWPGLLGTNKREFAKTYCDMKFFMGIQGKVFADYSKGIRLVELNVLLKQTVMIRRLKEHVMLQLPPKRRQIIRLLLKKSDIVAAKTAVGALTIDDPERASEDMPLGNSDEVDGDLSVQELGIAKLSGFREWLSLHPLIAGSENSKKMIIFAHHHKVLDGVQEFICEKGVGFVRIDGSTLPRDRQSAVVAFRSSSEVKIAIIGILAAGFGLDFSTAQDVVFLELPQCPTVMLQAEDRAHRRGQKNAVNVYIFCAKDTSDELRWKNLNKSLHRVSKTTDGKYDAMKEIVVDDISYLETYFKTDSSDEQSAREKALVETLLDKKPSPVNLSESEVKQDDKSDEQASFDNNSISTANITVQDKKSIPTVEADDMQPDHQLETDGHGSSHVGSLRFEVSPYTGRIHLYSCVLGTDARPQPLYENFRPEELELLCPVSDDEKKKIEVKSVKENPVYRHSLMEFAHEWRSLRPIERKKLLGKPLQLPLAVELCYLSESNNHNNKGLLNGGSKRRMTPLVEVCHPLPEDAVWKKVYLRSGLGKKEKEYTQGWSVTDEPLCKLCQKQCMGKNAKAPEFFEDLFCNLACYEEYRMRTSNRFLRQELFQIEHGVCTNCLLDCHKLVEHIKPLSLERRREYIEKVAPKVAKRKKMLEKLVNDPTEGNAWHADHIIPVYQGGGECKLENMRTLCVACHYDVTKEQCDERRKARANARKHLKFVMNNLKNGLTGTTVSNAKEHEAQEGDKLFINVPGSAYSLADPSETLLISGLV 1118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02862 1118 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 297 651 IPR027417 -
Adu08g02862 1118 CDD SF2_C_SNF 480 609 - -
Adu08g02862 1118 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 4 1069 - -
Adu08g02862 1118 Pfam Helicase conserved C-terminal domain 495 598 IPR001650 -
Adu08g02862 1118 Pfam SNF2-related domain 205 438 IPR000330 GO:0005524|GO:0140658
Adu08g02862 1118 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 490 644 IPR001650 -
Adu08g02862 1118 CDD DEXHc_HARP_SMARCAL1 187 412 - -
Adu08g02862 1118 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 168 412 IPR027417 -
Adu08g02862 1118 Pfam HNH endonuclease 1012 1046 IPR002711 GO:0003676|GO:0004519
Adu08g02862 1118 CDD HNHc 1006 1046 IPR003615 -
Adu08g02862 1118 Gene3D - 474 701 IPR027417 -
Adu08g02862 1118 Coils Coil 3 23 - -
Adu08g02862 1118 MobiDBLite consensus disorder prediction 680 707 - -
Adu08g02862 1118 Gene3D - 936 1070 - -
Adu08g02862 1118 Gene3D - 162 379 IPR038718 -
Adu08g02862 1118 PANTHER DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER 4 1069 - -
Adu08g02862 1118 SMART ultradead3 183 370 IPR014001 -
Adu08g02862 1118 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 196 360 IPR014001 -
Adu08g02862 1118 SMART helicmild6 515 598 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02862 Adu-Chr8 45114230 45126785 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02862 177 616 RAD5 or RAD16-like Gene Family AT1G02670 21.951 1.92e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Adu08g02862 SNF2_N 1e-26 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02862 K25861 - gmx:100788690 1549.64