Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02855 ATGTATCCACATCAGCAGCAGCAGCAGATGCAACATTTCTATCCATCTTCAAACCCATTCCTTTGGGCTTCAGAACCTTCTATTCACCCTCCTGGAACCGACCCAGTTCCCAATTGCAGCTCCTATCTTTCAAATTCAACCCTTTCCGTTGCTCCTTCTTACTCTTATGCTGCCCCACAATCAACTGATCCTCAGAATTGGATCGTTAAACAACCTGAATCCGTTGGATATGATGCTGCTGTTGGATCATCATCATCAATGTCTTCAAGTTTGCCTTTGACTTACGACGGCACATGGTTACAGCAAATTTTCACTCATGAGACGGCTAACCAAACCAAAGGCTCCAAATCAATGAGATGTGAAGTTTGCAAAATCGATTGTAATAGCAAAGACGTTTATGAAAAGCACATATTTGGAAAGAAACACAAGAAGAATATGCAGATAACTGCTAATCCCATGCTAGCGAATGTACAAAGTCAAACAAGTGTATGCAGCGAGGTAAAGAAACGGAAGCTTTCAAATGGTGGTGCACCCGTTGATTCTACGAAGGTTTGCACAATTTGCAACATTGTGTGCAACAGCCAGGATGTATATAACAAACATATAGCAGGAAAAAAGCATGCGGCTCAGGTTGCGTTGATGTCCAACAACGGGATTGGTCCATACATTGCTGCATTTAAGAGTCAAGGTATTGGTCCTTGGAAAAAAGCACCAAAGAAGGTCAAGGTTATGCAACCTGTATGGTGTGACACTTGCAAGGTTACTTGTAATAGCAGGGATATGTATGTTTCACACTTAGCGGGGAAGAAACATCTCAAAAACTTGGAGAAACAGTCAAAACCAGAAGCCAGTGCAAATGCCACCAAACTGTTAATTGGCCCGCAGGAAAAGCCGAATACTGATAAAGTGAAATCGGAGGAAAAGCCGGATACCGATAAACCAAAAGCAAAGAAGGCTAAGGACTTGGATATGGAGGCAAAGAAGCTCAAGGTTGTAGAAGGTGGCACTGCTGCAGATTCTGTTAGGACGTGCACTGCTTGTAATGTTGTATGCAACAGCGAGACAGTTTTCAATGCTCACCTTGCTGGCCATAAACATGCTGCTATGGTGAAGAAGCAAAATTTGGAGTCAAATGGGACAACTGCTAGCTGA 1152 0.4297 MYPHQQQQQMQHFYPSSNPFLWASEPSIHPPGTDPVPNCSSYLSNSTLSVAPSYSYAAPQSTDPQNWIVKQPESVGYDAAVGSSSSMSSSLPLTYDGTWLQQIFTHETANQTKGSKSMRCEVCKIDCNSKDVYEKHIFGKKHKKNMQITANPMLANVQSQTSVCSEVKKRKLSNGGAPVDSTKVCTICNIVCNSQDVYNKHIAGKKHAAQVALMSNNGIGPYIAAFKSQGIGPWKKAPKKVKVMQPVWCDTCKVTCNSRDMYVSHLAGKKHLKNLEKQSKPEASANATKLLIGPQEKPNTDKVKSEEKPDTDKPKAKKAKDLDMEAKKLKVVEGGTAADSVRTCTACNVVCNSETVFNAHLAGHKHAAMVKKQNLESNGTTAS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02855 383 MobiDBLite consensus disorder prediction 299 321 - -
Adu08g02855 383 PANTHER - 166 216 - -
Adu08g02855 383 PANTHER - 4 160 - -
Adu08g02855 383 PANTHER - 225 376 - -
Adu08g02855 383 Pfam Zinc-finger of C2H2 type 120 142 - -
Adu08g02855 383 Pfam Zinc-finger of C2H2 type 343 366 - -
Adu08g02855 383 Pfam Zinc-finger of C2H2 type 248 271 - -
Adu08g02855 383 Pfam Zinc-finger of C2H2 type 184 207 - -
Adu08g02855 383 Gene3D Classic Zinc Finger 101 148 - -
Adu08g02855 383 Gene3D Classic Zinc Finger 162 214 - -
Adu08g02855 383 Gene3D Classic Zinc Finger 234 279 - -
Adu08g02855 383 Gene3D Classic Zinc Finger 336 382 - -
Adu08g02855 383 PANTHER ZINC FINGER RNA-BINDING PROTEIN 4 160 - -
Adu08g02855 383 PANTHER ZINC FINGER RNA-BINDING PROTEIN 225 376 - -
Adu08g02855 383 PANTHER ZINC FINGER RNA-BINDING PROTEIN 166 216 - -
Adu08g02855 383 SUPERFAMILY beta-beta-alpha zinc fingers 110 147 IPR036236 -
Adu08g02855 383 SUPERFAMILY beta-beta-alpha zinc fingers 179 214 IPR036236 -
Adu08g02855 383 SUPERFAMILY beta-beta-alpha zinc fingers 242 278 IPR036236 -
Adu08g02855 383 SMART c2h2final6 183 207 IPR013087 -
Adu08g02855 383 SMART c2h2final6 342 364 IPR013087 -
Adu08g02855 383 SMART c2h2final6 118 142 IPR013087 -
Adu08g02855 383 SMART c2h2final6 247 271 IPR013087 -
Adu08g02855 383 SMART ZnF_U1_5 244 278 IPR003604 GO:0003676|GO:0008270
Adu08g02855 383 SMART ZnF_U1_5 339 373 IPR003604 GO:0003676|GO:0008270
Adu08g02855 383 SMART ZnF_U1_5 115 149 IPR003604 GO:0003676|GO:0008270
Adu08g02855 383 SMART ZnF_U1_5 180 214 IPR003604 GO:0003676|GO:0008270
Adu08g02855 383 MobiDBLite consensus disorder prediction 291 321 - -
Adu08g02855 383 SUPERFAMILY beta-beta-alpha zinc fingers 339 375 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02855 Adu-Chr8 45078539 45081020 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02855 176 370 C2H2 Transcription Factor Family AT5G61190 29.231 9.56e-22 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu08g02855 zf-met 1.8e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02855 - - adu:107463587 762.681