Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02830 ATGAACATAAAAAAGGGTGAGATTGAGAAGATGAATTGGAAGAATTTGAGTTACATTGATTGGGTCACCCCTCTTGGCCACCCCAATTTTCAATTTTTCTCCACAAATTTTGGAGATTCCAAAGTTCAGGTTGCAGATTGTGACACAAGAGAGTTCACCGATCAGAAAAGGGAGGAGATGCTTGTTTCGGAGTTTATAGGACGTTGCCTTCAAGATGTTGAAGGTTCTGCAGTCCAATGTAGCAATAGTCACTCTGTACCGTATTTGAAGGATTGGCATTTTGTAAAGGAGTATCCAGAATATGTAGCTTATAAAACTCCAATATTCTTTTGTGATGATTGGCTTAACCTGTATCTTGACAACTACAGAATGCATACTGATTCTGACAAATACCAAGAAAATAACGAAATATGTTGCTCTGACTATCGTTTTGTATACATGGGAGTTAAAGGATCTTGGACTCCTCTTCATGCCGATGTTTTCCGGTCATATAGCTGGTCGGCAAATGTTTGCGGAAAAAAGAGATGGCTTTTTCTAGATCCTTCCCAACATCATCTTGTATTTGACAGGAATATGAAAAATTGTGTATATAATATCTTTGATGAAGTGTCTGACTCAAAATTTCCTGGTTTCAAAAAGGCTATCTGGTTAGAATGCATGCAAGAAGCAGGGATGAATTTTTATGACTTCTTTACTTTCATACCACGCTTCACCTTGGCCAACATTGTCTTGCTTTGTTATATAAATGGAAGACACGGAAATATCACTCAAATCTCATCAACAATAGCTCAGCATTTATTGATGAATCTTGGATCCATAAGGAAGGTTGCATCGGAGATGAAAGACAGGCATGCTCTAAAAGGAAATCAGGATCGCGCTGTGGACATTATAGAAACACTTGAAGATCCTAGGTTTTGCAAATTGTGCATGGATATAGGAAGAACATATGCAATGATACATGAAGAGTCTCATTTGTCCTTTGATTTCGAGAGTGCTTCGGCTGGTGAAATAGCGGATCTCACTGTTTTGAAAGCACACACTTCATCTCAGTTCTACACACCGGAAGATCTTGTTGAATTTATAGACAATGCTGTTGCAGAACATGGTGACTGTTACATCAACTCATCTGTAATATGA 1137 0.3826 MNIKKGEIEKMNWKNLSYIDWVTPLGHPNFQFFSTNFGDSKVQVADCDTREFTDQKREEMLVSEFIGRCLQDVEGSAVQCSNSHSVPYLKDWHFVKEYPEYVAYKTPIFFCDDWLNLYLDNYRMHTDSDKYQENNEICCSDYRFVYMGVKGSWTPLHADVFRSYSWSANVCGKKRWLFLDPSQHHLVFDRNMKNCVYNIFDEVSDSKFPGFKKAIWLECMQEAGMNFYDFFTFIPRFTLANIVLLCYINGRHGNITQISSTIAQHLLMNLGSIRKVASEMKDRHALKGNQDRAVDIIETLEDPRFCKLCMDIGRTYAMIHEESHLSFDFESASAGEIADLTVLKAHTSSQFYTPEDLVEFIDNAVAEHGDCYINSSVI 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02830 378 Pfam JmjC domain, hydroxylase 145 193 IPR003347 -
Adu08g02830 378 Gene3D Cupin 10 228 - -
Adu08g02830 378 ProSiteProfiles JmjC domain profile. 95 265 IPR003347 -
Adu08g02830 378 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 12 224 - -
Adu08g02830 378 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 220 367 - -
Adu08g02830 378 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 12 224 - -
Adu08g02830 378 PANTHER 2-OXOGLUTARATE AND IRON-DEPENDENT OXYGENASE JMJD4 220 367 - -
Adu08g02830 378 SUPERFAMILY Clavaminate synthase-like 27 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02830 Adu-Chr8 44856806 44860138 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Adu08g02830 JmjC 1e-05 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02830 - - adu:107463569 475.322