Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02718 ATGGCTGATGGGGCTGGTGATGATTTGTTTAAAGAGCTATGGAGGTTGTGTGCAGGGCCATTAATGGATGTTCCTTGTGTTCAAGACAGAGTTTTCTATTTCCCTCAGGGTCACATTGAATTGTTGCCAGAACCTACAGAACAAGAATTGAGGCAGATGAAGAACCAGAAATCTCCCAAATACGATCTTCCTTCGAAGATTTTATGCCGTGTTATCGATGTTAAGTGTCTGGCCGAGATGGAAACCGACGAGGTTTATGCTCGAATCACTTTGCAGCCATCTTCAGATAATGATCCTCTAGATCCTAATCCAATTTGTTCCGAGAAACCGAAACAGAAATTTTACTCATTTTGTAAGACACTGAGTACCTCAGATACTAGCACACATGGAGGATTTTCGGTTCTTCGGAAGCACGCTAATGAATGCTTGCCTCAATTGGATATGACAATGGAAAATCCTACTCAGGAGTTGGTAGCAAAGGATATTCATGGGGTTGAATGGAAGTTTAAGCATATATACAGAGGACATCCGAAGAGGCACCTGCTTACAACTGGCTGGAGTGCATTCGTTGCGGCCAAGAAATTGGTTGCCGGAGATTCTTTTGTTTTTTTAAGGGGAGAGAATGGACAACTGAGAGTAGGCGTTAGGCGTTTGAATCCGCCACAGAGTCCTACACCTTCGTCCGTGGTGTCGACACAAAACATGCGCCTCGGAGTGATTGTTACTGCAAGCCATTCTGTTATGACTAGTACCATGTTTGTGGTTTATTACAAGCCAAGGACTAGCCAGTTTATTGTTAGTTTAAACAAATATATTGACACAATGAACAATGACTTCAAAATCGGCATGCGATTCAAGATGAGACATGAGGGTGAAGATCCACTTGACAAAAGGTTTTGTGGTACTATAATTGGAGTTGGAGATGAATCTCGAGAATGGCCGAATTCTCAATGGAGGTCATTGAAGGTTCAATGGGATGAACCAGCAACAATGCAAAGACCAGATAGAGTTTCATGTTGGGAGATTGAACCTCTTGTTACTTCGCCTTTGAATACGATTCAACCGATGGCGAAGGGAAAAAGATCAAGGCATGCTGAGGCTTCATCTTCTGCTGCTTCAGGTAGCAAAGAAAGCCAAGTAGCTACAATATGGCAGCCACCACATTTGAATGGCAATGGAAATTCTTCTCAAGACCCCGAAAACAACAAAGCCGTCGTCCCGGCCGGTCCAGCTGGCGAAGGCCCGGCACGCGACCACAATGAAGACAGGAAGAAGGGCATGGATTGCTGGTTGTTTGGGGTGAATTTGACTAGCAGCTATAGTAATGTTGTTACCCCTTTGGAGAAAGAACTTTGGTGTGAAGCTTCAACTATCCTTCATTGTGGTCCCAAAGAATCTATTATTGTTGGTGCATGTGAGACTGAGAAGGTTCAGAGTCTCAATAACCATTCACTGTCCAACAAGCAGGGCCATGTACCATCCATGAGGACTAGGACTAAGGTGAAAATGGAAGGTGTAGCAGTTGGTCGTGCAATTGACTTGACCACATTAAATGGTTATGATGAACTCATAGTTGAGCTTGAGAAAATGTTTGACATTGAAGGAGAAATTATATCTCAGAAGAAATGGGCTGTTACTTTCACTGATGAAGAAAATGACCTTATGCTTCTTGGTGATGATTTATGGCAGGACTTCTGCAAAATGGTGAAGAGGATTTTCATTTGTTCAAAGGAGGATTAA 1740 0.4305 MADGAGDDLFKELWRLCAGPLMDVPCVQDRVFYFPQGHIELLPEPTEQELRQMKNQKSPKYDLPSKILCRVIDVKCLAEMETDEVYARITLQPSSDNDPLDPNPICSEKPKQKFYSFCKTLSTSDTSTHGGFSVLRKHANECLPQLDMTMENPTQELVAKDIHGVEWKFKHIYRGHPKRHLLTTGWSAFVAAKKLVAGDSFVFLRGENGQLRVGVRRLNPPQSPTPSSVVSTQNMRLGVIVTASHSVMTSTMFVVYYKPRTSQFIVSLNKYIDTMNNDFKIGMRFKMRHEGEDPLDKRFCGTIIGVGDESREWPNSQWRSLKVQWDEPATMQRPDRVSCWEIEPLVTSPLNTIQPMAKGKRSRHAEASSSAASGSKESQVATIWQPPHLNGNGNSSQDPENNKAVVPAGPAGEGPARDHNEDRKKGMDCWLFGVNLTSSYSNVVTPLEKELWCEASTILHCGPKESIIVGACETEKVQSLNNHSLSNKQGHVPSMRTRTKVKMEGVAVGRAIDLTTLNGYDELIVELEKMFDIEGEIISQKKWAVTFTDEENDLMLLGDDLWQDFCKMVKRIFICSKED 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02718 579 SUPERFAMILY CAD & PB1 domains 490 572 - -
Adu08g02718 579 Gene3D - 492 579 - -
Adu08g02718 579 Gene3D - 115 218 IPR015300 -
Adu08g02718 579 CDD B3_DNA 116 217 IPR003340 GO:0003677
Adu08g02718 579 Pfam B3 DNA binding domain 117 217 IPR003340 GO:0003677
Adu08g02718 579 PANTHER AUXIN RESPONSE FACTOR 11 4 387 - -
Adu08g02718 579 PANTHER AUXIN RESPONSE FACTOR 11 420 579 - -
Adu08g02718 579 MobiDBLite consensus disorder prediction 366 402 - -
Adu08g02718 579 MobiDBLite consensus disorder prediction 351 422 - -
Adu08g02718 579 Pfam AUX/IAA family 488 532 IPR033389 -
Adu08g02718 579 Gene3D - 278 349 - -
Adu08g02718 579 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 420 579 IPR044835 GO:0003677|GO:0006355|GO:0009725
Adu08g02718 579 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 4 387 IPR044835 GO:0003677|GO:0006355|GO:0009725
Adu08g02718 579 SUPERFAMILY DNA-binding pseudobarrel domain 105 244 IPR015300 -
Adu08g02718 579 SMART B3_2 117 219 IPR003340 GO:0003677
Adu08g02718 579 ProSiteProfiles B3 DNA-binding domain profile. 117 219 IPR003340 GO:0003677
Adu08g02718 579 Pfam Auxin response factor 243 322 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Adu08g02718 579 ProSiteProfiles PB1 domain profile. 496 577 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02718 Adu-Chr8 43571770 43576747 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02718 7 574 B3 DNA Binding Superfamily AT2G46530 51.718 0.0 573
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Adu08g02718 B3 8.2e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02718 K14486 - gmx:100795763 719.539
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g02718 08 43571770 43576747 Adu08g02718 08 43571770 43576747 ECH
Adu03g02900 03 110109102 110113906 Adu08g02718 08 43571770 43576747 PCT
Adu08g02718 08 43571770 43576747 Adu01g01691 01 57168972 57171463 PCT