Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02647 ATGAAGAAGGGAATGACGTCATCGAGCTGGTGGTGGTTCCGCCGCCTATCGGGCGCCGCGAGCACCGCCAGGGTCACGACGCGTGACGCCGAACGTTACCTTCACAGACTCCGGTTAGAGTTCTGTAGTCAGATCGCTCCCAACGGTGTCCTCTACGCCGGAACCCTAACCGGGAAGGTAGCCGCGCTGGAAAATAGCTACGATCGGACGGTTGCATGTGCGAAGGGGAGTGCCGATGGTTCTGGTGGTCGTCGGAGCAACCTACGAAGAGCTGTTTGCCGCAGACGTGGGACCATCTCAGTTTCAGTCGCCCTCATCCTCCAATGTGCCTCTTCCGGAGTTTCCAATTGGCAATCAACAGCCTCTGCCTCCTCTGCCTCTGCCTCTGTCTCTGCCTCAGCCTCAGCCTCCGCCTCCTCTGCCTCTGCCGGAGTTTGCAGCCAATGTGCATCTGTGGCAGTGCCTCCGCTGCAGTTTGCCCCCAATGTCGGTGGTAATCAACAGCCTCAGCCTCAGCTTCCGCTTCCATCGCAGCTTGCCACCGATGTGCCTCTGCTGCAGTTTGCCGCCAATGTCGGTGGTAACCAACCGCCTCAGTTGCAGCTTCCGCCTCTGCATGAGTTTCCCGCTGACGTGTGTGGCTATCAACAACCTCAGGCACAGCCTGAGCCCGTCTGGAGTGAGGATGAGAACAAACAGTTTGAAATAATTATTGCTGAATGTCTTCCGGAAGAAATGCAGAACCGGTGGGAGGCTGTGGCTGCTTGTCTCCCCGGGAAGACCCCCGAGCAGATACAGGAACGCTTCCAGGAGCTCCTCACCGACATCAATCTCATCCATAAATCTTATATCAATCTGCATCACACCTCCATCGCACCTGCTGCACCTCCCACCACATTGGAACGCAATCCACTCTCCCTCCCCGGAACAAGTGAACAAAACCAACCTGCCAACACCAACATAATCGAACACCAACCTTTAACTAAGACTACTGAAAGAAAGAAAACAGTTCATTGGACTCAACAAGAGAAAGAGTTATTTCTTAGGGGATATAAAGAATTAGGACGTAATTGGAAAAGAATTTCGGAAGATTATGTCAAAACAAGAACGAAAGAACAAGTTGCTAGCCATGCACAAAAAGTTCTAAAAAAATTAGCTGAAAAAATAGAAGAAATAACATTTGTGATGAATGATAGTAAGTTATCTTCTCATTCTTAA 1218 0.5131 MKKGMTSSSWWWFRRLSGAASTARVTTRDAERYLHRLRLEFCSQIAPNGVLYAGTLTGKVAALENSYDRTVACAKGSADGSGGRRSNLRRAVCRRRGTISVSVALILQCASSGVSNWQSTASASSASASVSASASASASSASAGVCSQCASVAVPPLQFAPNVGGNQQPQPQLPLPSQLATDVPLLQFAANVGGNQPPQLQLPPLHEFPADVCGYQQPQAQPEPVWSEDENKQFEIIIAECLPEEMQNRWEAVAACLPGKTPEQIQERFQELLTDINLIHKSYINLHHTSIAPAAPPTTLERNPLSLPGTSEQNQPANTNIIEHQPLTKTTERKKTVHWTQQEKELFLRGYKELGRNWKRISEDYVKTRTKEQVASHAQKVLKKLAEKIEEITFVMNDSKLSSHS 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02647 405 SUPERFAMILY Homeodomain-like 331 385 IPR009057 -
Adu08g02647 405 PANTHER SYRINGOLIDE-INDUCED PROTEIN 1-3-1B 224 386 - -
Adu08g02647 405 SUPERFAMILY Homeodomain-like 223 274 IPR009057 -
Adu08g02647 405 CDD SANT 339 382 IPR001005 -
Adu08g02647 405 SMART sant 222 275 IPR001005 -
Adu08g02647 405 SMART sant 335 384 IPR001005 -
Adu08g02647 405 Gene3D - 220 285 - -
Adu08g02647 405 ProSiteProfiles Myb-like domain profile. 331 382 IPR001005 -
Adu08g02647 405 ProSiteProfiles Myb-like domain profile. 226 273 IPR001005 -
Adu08g02647 405 Gene3D - 338 385 - -
Adu08g02647 405 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 334 381 IPR006447 GO:0003677
Adu08g02647 405 CDD SANT 226 273 IPR001005 -
Adu08g02647 405 Pfam Myb-like DNA-binding domain 337 382 IPR001005 -
Adu08g02647 405 Pfam Myb-like DNA-binding domain 225 273 IPR001005 -
Adu08g02647 405 ProSiteProfiles SANT domain profile. 339 388 IPR017884 -
Adu08g02647 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 331 386 IPR017930 -
Adu08g02647 405 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 224 386 IPR043363 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02647 Adu-Chr8 42586397 42590795 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu08g02647 Myb_DNA-binding 9.2e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02647 - - ahf:112708481 468.774