Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02578 ATGAGCAGCGGCGGCCGGAAACGCCGTGCTCCACCGACTTCGCATCCCTCGCCGGCCACCCAGGCGAAAACCCAGGCCCTGTCTCAGGAAGATGATTTCGTCGATGAGGATGTGTTCCTCAACGAAACCCTCATCACGGAGGACGAAGAGTCCCTCATCCTCCGCGACATCGAGGAGCGCCAGGCCCTCGCTAACCGCCTCTCCAAGTGGACCCGCCCTGCCCTCTCCTCCGACTACGTTTCGCAATCTTGCAGCGTCCTTTTTCAGCAGCTGGAGATTGATTACGTAATTGGAGAGAGCCACAAAGAGTTGATGCCGAATTCGTCTGGACCTGCTGCTATAATTAGAATATTTGGTGTTACAAAGGAAGGACACAGTGTTTGCTGCAATGTTCATGGGTTTGAACCATATTTCTACATCAGCTGCCCGCCTGGAATGGGTCCGGATGATATCTCCCATTTTCATCAAACTCTTGAGGGAAGGATGCGAGAGGCCAATAGAAACAGTAACGTGGGCAAATTTGTTCGTCGTATTGAATTGGTGCAGAGAAGGAGCATTATGTATTATCAGCAGTCCAGTTCTCATCCCTTTCTCAAAATTGTAGTTGCTCTCCCCACAATGGTTGCCAGCTGCCGTGGTATTCTTGATAGAGGTATTCAGCTTAATGGTCTTGGCATGAAGAGCTTCATGACTTATGAAAGCAATGTACTTTTTGCCCTTCGCTTCATGATTGATTGCAATATAGTTGGTGCAAGAAGCTTGTCTAACTGTCAGTTAGAGTTTGATTGCTTGCATTCGGAATTGATTAGCCATGCTCCAGAAGGTGAATATTCAAAGATGGCACCATTTCGCATATTGAGTTTTGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGAGCCTACCCATGATCCTGTTATCCAGATTGCTAATCTAGTTACATTACAAGGAGAAGATCAGCCATTCATCCGTAATGTGATGACCCTTAATTCATGTTCTCCCATAGTTGGTGTTGATGTGATGTCGTTTGATACAGAAAGAGAAGTCCTTCTGGCCTGGAGGGATTTCATCCATGAAGTTGATCCTGATATTATAATTGGATATAACATCTGCAAATTTGACCTGCCATATCTTATTGAGAGAGCTCAAGCCTTGAAAATAGCAGAATTTCCTATTCTGGGCCGTATCAGGAACAGTAGGGTCCGAGTAAAGGATACAACTTTTTCATCTAGACAGTATGGAACCAGAGAAAGTAAAGAAGTTGCTGTAGAAGGGAGAGTTCAATTTGATCTGCTCCAGGTTATGCAAAGAGACTACAAATTAAGTTCTTATTCTTTGAATTCTGTTTCAGCACACTTTCTTTCTGAGCAGAAAGAGGATGTTCACCATTCTATCATATCTGATCTTCAGAATGGAAATGCAGAAACTAGGAGGCGCCTTGCTGTGTATTGTTTAAAGGATGCTTATCTCCCTCAACGGCTTTTAGATAAATTGATGTTCATTTATAATTATGTGGAGATGGCTCGAGTAACAGGTGTCCCAATTTCTTTTCTGCTTGCTAGGGGCCAAAGCATTAAGGCAAAGCAGAAGAACCTGGTTCTTCCTAATGTAAAACAGGCTGGTTCAGAACAAGGAACATATGAAGGTGCCACTGTATTGGAGGCAAGAGCTGGGTTCTATGAAAAGCCAATTGCTACTTTAGATTTTGCATCACTATATCCATCTATTATGATGGCCTATAATTTATGTTATTGTACCCTGGTGACTCCTGAAGATGTTCGGAAACTTAATCTTCCTCCAGAATCAGTGAACAAAACTCCATCTGGGGAAACATTTGTTAAATCAAATTTGCAGAAGGGAATACTTCCTGAAATTCTTGAAGAGCTTTTAGCCGCGCGTAAAAGGGCAAAAGCAGATTTGAAGGAGGCAAAAGATCCCCTTGAGAAAGCCGTGCTTGATGGTAGACAACTGGCCCTGAAGATCAGTGCAAATTCTGTATATGGGTTTACTGGGGCAACTATTGGTCAGTTACCATGCTTGGAGATATCGTCAAGTGTAACTAGCTATGGTCGACAAATGATTGAGCACACAAAAAAACTTGTGGAAGATAAATTTACAACTCTTAATGGCTATGAACACACTGCCGAGGTAATATATGGTGACACGGATTCAGTCATGGTTCAGTTTGGTGTCTCTACGGTAGAAGAGGCTATGAACCTGGGAAGAGAAGCTGCTGAATATATTAGTGGAACTTTCACAAAACCCATCAAACTAGAGTTTGAGAAGGTTTACTTTCCATATCTCCTAATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCAGACAACTTTGACAAAATGGACACTAAAGGTATTGAAACAGTTCGGAGAGACAATTGTTTATTAGTCAAAAACCTTGTGAACGATTGCCTTCACAAAATATTGATTGATAGGGACATCCCTGGGGCAGTTCAATATGTTAAAAATGCAATTTCAGATCTTCTTATGAACCGAATGGATTTATCACTTTTGGTTATTACAAAGGGTTTGACAAAGACAGGAGATGATTATGAAGTGAAGGCAGCTCATGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCTGCCACTGCTCCAAATGTTGGGGATAGAGTACCATATGTCATTATTAAAGCTGCAAAGGGTGCCAAGGCTTATGAGAGATCAGAGGATCCAATATACGTCCTGGAGAACAATATTCCTATAGATCCCCAATACTATCTTGAGAATCAAATCAGCAAGCCAATTCTAAGGATTTTTGAGCCAATTCTGAAGAATGCTAGCAAAGAACTTCTCCATGGAAGCCACACAAGATCTATTTCGATTTCTACTCCGTCAAACAGTGGCATCATGAAATTTGCTAAGAAACAGCTAACTTGCATTGGTTGCAAAGCTTTACTTAGCAAGGGAAATCACACTCTTTGCTCACATTGCAAAGGAAGGGAAGCCGAGCTGTACTGCAAAACAGTGACACATGTTTCCGAACTAGAAATGCTTTTTGGGAGGTTGTGGACACAGTGCCAGGAATGTCAAGGTTCACTTCATCAGGACGTTCTCTGTACAAGTCGTGATTGTCCTATTTTTTATCGACGAAAAAAGGCTCAAAAAGATATGGCTGAAGCAAAGCTGCAACTTGACCGATGGAACTTCTAA 3201 0.4236 MSSGGRKRRAPPTSHPSPATQAKTQALSQEDDFVDEDVFLNETLITEDEESLILRDIEERQALANRLSKWTRPALSSDYVSQSCSVLFQQLEIDYVIGESHKELMPNSSGPAAIIRIFGVTKEGHSVCCNVHGFEPYFYISCPPGMGPDDISHFHQTLEGRMREANRNSNVGKFVRRIELVQRRSIMYYQQSSSHPFLKIVVALPTMVASCRGILDRGIQLNGLGMKSFMTYESNVLFALRFMIDCNIVGARSLSNCQLEFDCLHSELISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEDQPFIRNVMTLNSCSPIVGVDVMSFDTEREVLLAWRDFIHEVDPDIIIGYNICKFDLPYLIERAQALKIAEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVAVEGRVQFDLLQVMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLARGQSIKAKQKNLVLPNVKQAGSEQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPESVNKTPSGETFVKSNLQKGILPEILEELLAARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLNGYEHTAEVIYGDTDSVMVQFGVSTVEEAMNLGREAAEYISGTFTKPIKLEFEKVYFPYLLISKKRYAGLFWTKPDNFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLTCIGCKALLSKGNHTLCSHCKGREAELYCKTVTHVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEAKLQLDRWNF 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02578 1066 SUPERFAMILY Ribonuclease H-like 112 520 IPR012337 -
Adu08g02578 1066 Pfam DNA polymerase family B 527 939 IPR006134 GO:0000166|GO:0003677
Adu08g02578 1066 Gene3D Palm domain of DNA polymerase 547 777 IPR023211 -
Adu08g02578 1066 CDD POLBc_delta 547 940 - -
Adu08g02578 1066 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 85 1066 - -
Adu08g02578 1066 SUPERFAMILY DNA/RNA polymerases 531 941 IPR043502 -
Adu08g02578 1066 PANTHER DNA POLYMERASE DELTA CATALYTIC SUBUNIT 85 1066 - -
Adu08g02578 1066 Coils Coil 1047 1066 - -
Adu08g02578 1066 Pfam DNA polymerase family B, exonuclease domain 121 450 IPR006133 -
Adu08g02578 1066 TIGRFAM pol2: DNA polymerase (pol2) 542 937 - -
Adu08g02578 1066 MobiDBLite consensus disorder prediction 1 31 - -
Adu08g02578 1066 ProSitePatterns DNA polymerase family B signature. 720 728 IPR017964 GO:0000166|GO:0003676
Adu08g02578 1066 PRINTS DNA-directed DNA-polymerase family B signature 565 578 IPR006172 GO:0000166|GO:0003676|GO:0003887
Adu08g02578 1066 PRINTS DNA-directed DNA-polymerase family B signature 657 669 IPR006172 GO:0000166|GO:0003676|GO:0003887
Adu08g02578 1066 PRINTS DNA-directed DNA-polymerase family B signature 718 726 IPR006172 GO:0000166|GO:0003676|GO:0003887
Adu08g02578 1066 CDD DNA_polB_delta_exo 277 506 - -
Adu08g02578 1066 SMART polmehr3 281 732 IPR006172 GO:0000166|GO:0003676|GO:0003887
Adu08g02578 1066 Gene3D Helix hairpin bin 621 673 - -
Adu08g02578 1066 Gene3D - 282 500 IPR036397 GO:0003676
Adu08g02578 1066 Gene3D DNA Polymerase, chain B, domain 1 91 262 - -
Adu08g02578 1066 Gene3D - 794 949 IPR042087 -
Adu08g02578 1066 MobiDBLite consensus disorder prediction 14 28 - -
Adu08g02578 1066 Pfam C4-type zinc-finger of DNA polymerase delta 976 1047 IPR025687 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02578 Adu-Chr8 41849100 41861339 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02578 7 1066 Core DNA Replication Machinery Family AT5G63960 80.309 0.0 1820
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02578 K02327 - gmx:100817379 1954.87