Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02474 ATGCAAGAAACCATGTTATTGCACTGTGAGATTTTCAGGTTAGATGTGTATATCCATGATTACCTGGTAAAGAGGGATTTGAAGGCTTCTGCTCAGGCTTTTCAAGCTGAGGGGAAAGTTTCCTCTGACCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTGTTCGAGTGGTGGTCGGTTTTCTGGGACATTTTTATTGCGAGGACTAATGAGAAGCACTCGGAGGTTGCAGCCTCTTATATTGAGACACAACTAATGAAGGCCAGGGAGCAACAGCAGCAGCAACCACAGCAGCCGCAGCAGCAGCAACAACAACAACAACAACAGCAGCAGCAGCCGCAACAACCACAACAACAGCAGCCCCCACAACCACAACCGCAGCAGCAGCAGCAACCACCGCCACAACAACAGCAAGGTAGGGACAGGGCTAATCTCATAAACGGCAATACGAATGGGTTAGTTGGGAACCCGGGAACTGCCAATGCACTAGCAACAAAGATGTATGAGGAGAGGCTAAAGAGAGATTCTTTGGATGAAGCAGCAATGAAGCAAAGATTCGGTGGCGAGAACATGGGTCAAATTTTGGATCCTAATCATGCCTCAATTTTGAAGTCAGCTGCTGCTACTGGCCAGCCTTCAGGGCAAGTTTTGCATGGTGCTACTGCGGCTGGCATGCCTCCACAAGTTCAAGCTCGTAGTCAGCAATTAGCAGGGTCTACTCCAGATATAAAGAGTGAGATTAATCCTGTACTGAACCCTAGAGCTGCGGGTGCTGAAGGATCATTGATGGGAATTCCTGGACCAAATCAAGGTAGTAACAATTTGACTTTGAAGGGATGGCCACTCACAGGTTTGGAGCAACTCCGCTCTGGTCTACTCCAGCAACAAAAGCCTTTCATGCAGGCTCCTCAGCCGTTTCATCAACTTCAAATGTTGACACCACAGCATCAGCAACAGATAATGCTTGCGCAGCAAGGCTTGGCATCTCCATCTGCCAGTGATGACAATAGAAGACTCAGAATGCTGTTGAACAATAGGAGTATGAGCCTAAACAAGGATGGTCTTTCAAATCCTGTTGATGTAGTGCCAAATGTTGGATCTCCACTTCAAGGTGGCGGCCCTCCTTTTCCTCGTGGAGATACAGATATGCTAATGAAGTTGAAATTGGCTCAAATGCAGCAGCAACATCAGCAACAGCCAAACAGCAATCCACAGCTGCAGCAACTTCAACAGCATGCTCTCTCAAATCAGCAATCTCAGACTTCAAGCCATAACATGCATCAGCAAGATAAAGTAGGGGGAGGTGGTGGCAGTGTTACTGCAGATGGTAGCATGTCGAACTCATTTAGAGGAAATGATCAGGCCTCGAAAAACCAGATTGGGAGAAAGAGAAAGCAGCCTGTATCTTCTTCAGGTCCTGCCAATAGTACAGGAACTGCTAATACAACAGGTCCATCACCAAGTTCGGCACCCTCGACTCCCTCGACTCATACACCTGGAGATGTGATATCTATGCCATCTATGACTGGTACTACTTCTTCAAAGCCATTAATGATGTTCAGCACTGACGGCACCGGGACTCTTACATCACCTTCAAACCAATTGGCTGATGTGGATCGCTTTGTGGAGGACGGATCTCTTGATGAAAATGTTGAGTCTTTTTTATCCCATGATGATACGGATCCTAGAGATACGGTCGGTCGTTGTATGGATGTAAGCAAAGGCTTCACGTTTTCTGATGTAAATTCTGTACGTGCTAGCACAAGCAAAGTTGTATGTTGTCATTTTTCATCTGATGGGAAATTACTTGCAAGCGGTGGGCACGACAAGAAGGCTGTTTTATGGCACACGGATACCTTGAAGCAGAAGGCTGTTCTTGAAGAGCATTCGTCTATGATCACCGATGTTCGTTTTAGTCCAAGCATGCCTCGTTTAGCAACATCTTCATTTGACAAAACTGTCAGGGTTTGGGACATTGATAATCCTGGTTATTCGCTTCGCACCTTTACAGGACATTCAGCATCTGTAATGTCCCTAGATTTCCATCCAAATAAAGAGGATCTTATCTGCTCTTGTGATGGTGACGGCGAGATACGATATTGGAGCATAAATAATGGAAGTTGTGCAAGAGTCTTCAAGGGTGGCACCGCCCAGATGAGATTTCAACCACGTCTAGGGAGGTACCTGGCTGCAGCTGCAGAGAATGTTGTTTCTATACTTGATGTGGAGACACAAGGATGCCGATATTCATTAAAGGGCCATACGAAGCCGATACATTCCGTGTGTTGGGACCCTTCCGGGGAGTTGCTGGCATCCGTGAGTGAGGACTCGGTCCGGGTTTGGACTCTAGGAACCGGGAGTGAAGGGGAATGTGTTCATGATCTTAGCAGTAATGGCAGTAAGTTTCAATCATGTGTCTTCCACCCGTCTTATCCGTCGTTGCTCGTCATTGGCTGTTACCAGGCAAGTCTACCTTATATGTTTCCTTGTCCAATTTCTTTCCCTTTGATAGTGGTGAATTTAGCTGTCATGATCTTTCCATACACAATAAAAACCGAGGTTTGTTCGAGAATCATGCTTGGTAAGAAAGGGTTGCAATGA 2601 0.4652 MQETMLLHCEIFRLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIETQLMKAREQQQQQPQQPQQQQQQQQQQQQQPQQPQQQQPPQPQPQQQQQPPPQQQQGRDRANLINGNTNGLVGNPGTANALATKMYEERLKRDSLDEAAMKQRFGGENMGQILDPNHASILKSAAATGQPSGQVLHGATAAGMPPQVQARSQQLAGSTPDIKSEINPVLNPRAAGAEGSLMGIPGPNQGSNNLTLKGWPLTGLEQLRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQIMLAQQGLASPSASDDNRRLRMLLNNRSMSLNKDGLSNPVDVVPNVGSPLQGGGPPFPRGDTDMLMKLKLAQMQQQHQQQPNSNPQLQQLQQHALSNQQSQTSSHNMHQQDKVGGGGGSVTADGSMSNSFRGNDQASKNQIGRKRKQPVSSSGPANSTGTANTTGPSPSSAPSTPSTHTPGDVISMPSMTGTTSSKPLMMFSTDGTGTLTSPSNQLADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVSKGFTFSDVNSVRASTSKVVCCHFSSDGKLLASGGHDKKAVLWHTDTLKQKAVLEEHSSMITDVRFSPSMPRLATSSFDKTVRVWDIDNPGYSLRTFTGHSASVMSLDFHPNKEDLICSCDGDGEIRYWSINNGSCARVFKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQGCRYSLKGHTKPIHSVCWDPSGELLASVSEDSVRVWTLGTGSEGECVHDLSSNGSKFQSCVFHPSYPSLLVIGCYQASLPYMFPCPISFPLIVVNLAVMIFPYTIKTEVCSRIMLGKKGLQ 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02474 866 MobiDBLite consensus disorder prediction 117 131 - -
Adu08g02474 866 MobiDBLite consensus disorder prediction 132 158 - -
Adu08g02474 866 MobiDBLite consensus disorder prediction 440 516 - -
Adu08g02474 866 ProSiteProfiles Trp-Asp (WD) repeats profile. 584 625 IPR001680 GO:0005515
Adu08g02474 866 ProSiteProfiles LIS1 homology (LisH) motif profile. 10 42 IPR006594 GO:0005515
Adu08g02474 866 PANTHER TRANSCRIPTIONAL COREPRESSOR LEUNIG-LIKE PROTEIN 14 822 - -
Adu08g02474 866 ProSiteProfiles Trp-Asp (WD) repeats profile. 626 661 IPR001680 GO:0005515
Adu08g02474 866 Pfam WD domain, G-beta repeat 665 702 IPR001680 GO:0005515
Adu08g02474 866 Pfam WD domain, G-beta repeat 747 781 IPR001680 GO:0005515
Adu08g02474 866 Pfam WD domain, G-beta repeat 624 658 IPR001680 GO:0005515
Adu08g02474 866 Pfam WD domain, G-beta repeat 586 615 IPR001680 GO:0005515
Adu08g02474 866 ProSitePatterns Trp-Asp (WD) repeats signature. 645 659 IPR019775 -
Adu08g02474 866 ProSiteProfiles Trp-Asp (WD) repeats profile. 669 711 IPR001680 GO:0005515
Adu08g02474 866 Gene3D - 560 718 IPR015943 GO:0005515
Adu08g02474 866 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 14 822 IPR044716 GO:0003714
Adu08g02474 866 SUPERFAMILY WD40 repeat-like 582 820 IPR036322 GO:0005515
Adu08g02474 866 MobiDBLite consensus disorder prediction 90 158 - -
Adu08g02474 866 MobiDBLite consensus disorder prediction 390 516 - -
Adu08g02474 866 SMART WD40_4 577 616 IPR001680 GO:0005515
Adu08g02474 866 SMART WD40_4 705 741 IPR001680 GO:0005515
Adu08g02474 866 SMART WD40_4 662 702 IPR001680 GO:0005515
Adu08g02474 866 SMART WD40_4 619 658 IPR001680 GO:0005515
Adu08g02474 866 SMART WD40_4 744 782 IPR001680 GO:0005515
Adu08g02474 866 SMART WD40_4 788 829 IPR001680 GO:0005515
Adu08g02474 866 CDD WD40 584 819 - -
Adu08g02474 866 Gene3D - 719 824 IPR015943 GO:0005515
Adu08g02474 866 MobiDBLite consensus disorder prediction 390 429 - -
Adu08g02474 866 ProSiteProfiles Trp-Asp (WD) repeats profile. 751 791 IPR001680 GO:0005515
Adu08g02474 866 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 626 661 - -
Adu08g02474 866 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 669 707 - -
Adu08g02474 866 MobiDBLite consensus disorder prediction 90 116 - -
Adu08g02474 866 Pfam LisH 14 38 IPR006594 GO:0005515
Adu08g02474 866 SMART Lish 10 42 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02474 Adu-Chr8 40578601 40585203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02474 629 826 Miscellaneous Gene Families AT5G08390 27.451 6.88e-17 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Adu08g02474 WD40 0.00013 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02474 - - gmx:100805628 1229.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g02474 08 40578601 40585203 Adu08g02474 08 40578601 40585203 ECH
Adu06g02775 06 104778686 104788649 Adu08g02474 08 40578601 40585203 PCT