Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02455 ATGGCGGAAGATAATAACGAAGTCACACAAACATTTAAGGATTTGGGATTATCTGAAGAATTGGTGGAAACTTGTGATAAATTAGGTTGGAAAAATCCATTGAAGATACAATCAGAAGCGATTCCTCTTGCACTACAAGGAAAAGATGTGATTGGACTCGCCCAAACGGGTTCTGGTAAGACTGGAGCTTTTGCACTTCCCATATTGCATGCCCTCTTAGAGGCGCCACGCCCCAATGATTTCTTCGCATGTGTGTTGTCTCCCACAAGAGAACTTGCTATTCAAATTGCTGAGCAGTTTGAAGCTTTAGGGTCTGGGATTGGTGTCAAGTGTGCTGTGCTTGTTGGAGGGATTGACATGGTACAGCAATCCATCAAGATAGCAAAGCAGCCTCATATTATTGTCGGAACACCAGGACGCGTTTTAGATCACCTCAAAAACACCAAAGGATTTTCTCTTAATAGATTAAAATATTTGGTCCTAGATGAGGCAGACAGGCTGTTGAATGAGGACTTTGAGGAATCACTTAATGAGATTATACAATTGATTCCTCGCGAGCGGAGAACATTTCTGTTTTCTGCTACAATGACTAAGAAGCTCCAAAGAGTTTGTTTAAGGAATCCTGTGAAGATTGAAGCAGCCTCTAAGTATTCTACTGTTGACACACTGAAGCAGCAATATCGTTTCTTACCTGCCAAACACAAGGATTGCTACCTTGTGTACATTCTCACTGAAATGGCTGGAAGTACATCAATGGTGTTCACTCGTACATGTGATTCAACTCGTCTTCTTGCTTTGATTCTTAGTAATCTTGGTCTCAAAGCCATCCCAATTAATGGTCATATGACCCAGTCAAAAAGGCTTGGAGCCTTGAATTTATTCAAGTCGGGGGCTCGCAATATTCTCATTTGTACTGATGTAGCTAGTAGAGGATTGGATATTCCAACAGTAGATGTTGTGATTAACTATGACATCCCCACAAACTCCAAAGATTATATACATCGTGTAGGAAGGACTGCTCGTGCAGGGCGTTCTGGGGTTGCAATTTCCCTTGTGAACCAATATGAGCTGGAGTGGTACATTCAAATAGAGAAACTTATAGGCAAGAAGCTACCAGAATATCCTGCACAAGAAGAGGAAAAAATGAAGGAGGAAGCCATGGGGAAGAAGAAACGGAGAGGTGAATCAGATTATGGCGAAGAAGATATCGACAAATACTTAGGTCTCAAGGATAAGAAATCATCCAAAAAGTTTAGAAGATGA 1263 0.4133 MAEDNNEVTQTFKDLGLSEELVETCDKLGWKNPLKIQSEAIPLALQGKDVIGLAQTGSGKTGAFALPILHALLEAPRPNDFFACVLSPTRELAIQIAEQFEALGSGIGVKCAVLVGGIDMVQQSIKIAKQPHIIVGTPGRVLDHLKNTKGFSLNRLKYLVLDEADRLLNEDFEESLNEIIQLIPRERRTFLFSATMTKKLQRVCLRNPVKIEAASKYSTVDTLKQQYRFLPAKHKDCYLVYILTEMAGSTSMVFTRTCDSTRLLALILSNLGLKAIPINGHMTQSKRLGALNLFKSGARNILICTDVASRGLDIPTVDVVINYDIPTNSKDYIHRVGRTARAGRSGVAISLVNQYELEWYIQIEKLIGKKLPEYPAQEEEKMKEEAMGKKKRRGESDYGEEDIDKYLGLKDKKSSKKFRR 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02455 420 Pfam DEAD/DEAH box helicase 35 202 IPR011545 GO:0003676|GO:0005524
Adu08g02455 420 PANTHER BNAC02G41920D PROTEIN 4 382 - -
Adu08g02455 420 SMART helicmild6 262 343 IPR001650 -
Adu08g02455 420 Pfam Helicase conserved C-terminal domain 238 343 IPR001650 -
Adu08g02455 420 Gene3D - 1 216 IPR027417 -
Adu08g02455 420 CDD DEADc_DDX47 11 212 IPR044765 GO:0005524
Adu08g02455 420 Gene3D - 217 399 IPR027417 -
Adu08g02455 420 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 10 38 IPR014014 GO:0003724
Adu08g02455 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 364 IPR027417 -
Adu08g02455 420 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 160 168 IPR000629 -
Adu08g02455 420 SMART ultradead3 29 226 IPR014001 -
Adu08g02455 420 PANTHER RNA HELICASE 4 382 - -
Adu08g02455 420 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 41 214 IPR014001 -
Adu08g02455 420 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 238 382 IPR001650 -
Adu08g02455 420 MobiDBLite consensus disorder prediction 377 399 - -
Adu08g02455 420 CDD SF2_C_DEAD 223 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02455 Adu-Chr8 40350580 40356246 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02455 4 375 Eukaryotic Initiation Factors Gene Family AT3G19760 31.398 2.41e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02455 K14777 - gmx:100775796 732.635