Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02447 ATGTATAGTAATAATACACAATCACAGTTCACAACTCACACATCACTGGCGAGGAGTAAAGAAGAGCTCGCCGGTGATGGTGACGGTGGCGACCCAGAGGACGATGGTGAGAAGAAAGAAGAGGTGACGAAGAAGAAGGCAGATTTTCTGCTGTTTTTGGCAAACAGAAGAGATGAAGAACAAGAAATCAGAGACGACGCCGGCTGTGCATGCAAGCTTCTGAAAGAGAAAGAGATGATGGTGATGGCCGTTGAAGCGGCTAAGAAGAAGAAGAATGGCAGCGAAAAAGCGTTCGGTAAAGACAGATCGGAACAGAAGTGTCTGATGCAGTGGTTTGCATATGTTGTTATGGAGGAGGCGATAATAATGTACTCATCCGAGGGAAAAGTGTACAATCTGTCATCAAACACAGAAAGCATGCACGGAGAAGAATTGGTTCAATCAAAAGAACATGAAAAGATCAATGACTTGCAAGAGAGAGGATATATGAAATACGGATGTCAACATTATCGGAGAAGATGTCGTATTAGGGCCCCCTGCTGCAATGAGATTTTTCACTGTCGCCATTGTCATAATGAGGCAAAGGATGATATCAAGATTGATCCAAAGCTTAGACATGACCTTTCCCGTCATCAAATTAAACAGGTGATATGTTTACTTTGCGGGACTGAACAAGAGGTTCAGCAAAACTGCATTAGTTGTGGAGTTTGTATGGGGAAGTACTTTTGCGGGATATGCAAGCTTTTTGATGACGATGTATCTAAGAAACAATACCATTGCGGCGGCTGTGGAATTTGCAGAACTGGAGGATCTGAAAATTTCTTCCACTGCGACAAGTGTGGTTGTTGCCAGTCTACTCTGCTGAAAAATAGTCACGCTTGTGTGGAGAAGGCAATGCATCATGATTGTCCTGTTTGTTTTGAGTATTTGTTCGAATCGATGGATGAAATCGCTGTCTTGCCATGTGGACATACAATCCATATCAACTGTATGAATGAAATGAGAAAGCATTTACAGTATGCATGCCCTCTTTGCTCAAAGTCAGTTTGTGATATGTCAAAGGTTTGGGAGAAGTTTGACTTGGAGATTGCTGCTACACCAATGCCTGAACAATATCAAAATAAAATGGTTTGGATCCTTTGCAATGATTGTGGTAAAAGTAGTAACGTAAAGTACCATATTATTGCTCAAAAGTGCTTGAATTGCAACTCCTACAACACAAGACAAACTTGA 1233 0.4169 MYSNNTQSQFTTHTSLARSKEELAGDGDGGDPEDDGEKKEEVTKKKADFLLFLANRRDEEQEIRDDAGCACKLLKEKEMMVMAVEAAKKKKNGSEKAFGKDRSEQKCLMQWFAYVVMEEAIIMYSSEGKVYNLSSNTESMHGEELVQSKEHEKINDLQERGYMKYGCQHYRRRCRIRAPCCNEIFHCRHCHNEAKDDIKIDPKLRHDLSRHQIKQVICLLCGTEQEVQQNCISCGVCMGKYFCGICKLFDDDVSKKQYHCGGCGICRTGGSENFFHCDKCGCCQSTLLKNSHACVEKAMHHDCPVCFEYLFESMDEIAVLPCGHTIHINCMNEMRKHLQYACPLCSKSVCDMSKVWEKFDLEIAATPMPEQYQNKMVWILCNDCGKSSNVKYHIIAQKCLNCNSYNTRQT 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02447 410 ProSiteProfiles Zinc finger CHY-type profile. 160 236 IPR008913 GO:0008270
Adu08g02447 410 Pfam CHY zinc finger 167 248 IPR008913 GO:0008270
Adu08g02447 410 PANTHER CHY-TYPE/CTCHY-TYPE/RING-TYPE ZINC FINGER PROTEIN 129 410 - -
Adu08g02447 410 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 129 410 - -
Adu08g02447 410 SUPERFAMILY RING/U-box 302 351 - -
Adu08g02447 410 MobiDBLite consensus disorder prediction 1 18 - -
Adu08g02447 410 ProSiteProfiles Zinc finger RING-type profile. 303 346 IPR001841 -
Adu08g02447 410 Pfam Ring finger domain 302 345 IPR001841 -
Adu08g02447 410 MobiDBLite consensus disorder prediction 1 41 - -
Adu08g02447 410 SUPERFAMILY CHY zinc finger-like 164 238 IPR037274 GO:0008270
Adu08g02447 410 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 348 IPR013083 -
Adu08g02447 410 Gene3D - 374 410 - -
Adu08g02447 410 SUPERFAMILY Zinc hairpin stack 239 296 IPR037275 -
Adu08g02447 410 SMART ring_2 303 345 IPR001841 -
Adu08g02447 410 Pfam Zinc-ribbon 350 408 IPR039512 -
Adu08g02447 410 ProSiteProfiles Zinc finger CTCHY-type profile. 238 302 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02447 Adu-Chr8 40244028 40250370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02447 165 408 C2H2 Transcription Factor Family AT3G18290 40.800 1.43e-56 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02447 K10144 - gmx:100803569 527.709
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g02447 08 40244028 40250370 Adu08g02447 08 40244028 40250370 ECH
Adu06g02761 06 104578251 104581343 Adu08g02447 08 40244028 40250370 PCT