Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02390 ATGGAGAGAGGGTTTGATAGAAGGTACATAAAGAAAGGACCATGGAGCAGAGAGGAAGATGAGGTGCTCCAGGAGCATGTTAACAAGTATGGTGCAAGGGATTGGAGCTCCATTCGATCCAAAGGCTTGTTGCCTCGAACTGGAAAATCTTGTCGCCTTCGATGGGTTAACAAGCTTAGACCAAACTTGAAGATAGGGTGCAAGTTTACGGAAGAAGAGGAGAAGTTGGTAATAGAGTTACAAGGGCAATTTGGGAACAAATGGGCAAAAATTGCTACATATTTGGAAGGAAGAACAGACAACGATGTAAAGAATTTCTGGAGCAGTAGGAGAAAGAGGATAGAGAGGATGTTGCGGAAGCCATCAATAACTTCGTCAAAGATGCAAAACAAAAACAAAGAAAAAGTCCCTCTTAGTCAAGTACAATTTGAAGAGGATATTTCATGCAGCTCCAATAAGCCAGAGGAAAATATCCCCTGTGGAAACTACCTTCCTTATTACACTGCTCCCTACATGGGAAACACTGAAGAGTTCAAAATGGTCAACCTACCAGATTTGACAAAACCAAACCACCAAAATTTGGAAAGTGACATCAACACTTCTTCTCAGGCTTTTGAGGCCACCCCACTCCATGTGGTACCTTCTTTTGAGTCTTCAACAACAGAGTACACATTTCCTCAAATCCCAAATGAACCACAACTGGAATTTCCAGTGTTTCCAGAACCAATTGATGACCCTTACTTCTTTGATATGCTTGAGCAAAAAAGTGTTCAGAACAAGATTGGAACAACTGTTGGATTGGATGGAAAGCCTCAAAATGAAAGTGCTAAGTGCTTCTTTGAGGACATCCCAACTGAGATCTTTGAATACTTTGACCATACTCCAACTTCATCAGACCAATAA 903 0.4131 MERGFDRRYIKKGPWSREEDEVLQEHVNKYGARDWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKIGCKFTEEEEKLVIELQGQFGNKWAKIATYLEGRTDNDVKNFWSSRRKRIERMLRKPSITSSKMQNKNKEKVPLSQVQFEEDISCSSNKPEENIPCGNYLPYYTAPYMGNTEEFKMVNLPDLTKPNHQNLESDINTSSQAFEATPLHVVPSFESSTTEYTFPQIPNEPQLEFPVFPEPIDDPYFFDMLEQKSVQNKIGTTVGLDGKPQNESAKCFFEDIPTEIFEYFDHTPTSSDQ 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02390 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 115 IPR017930 -
Adu08g02390 300 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Adu08g02390 300 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Adu08g02390 300 SMART sant 65 113 IPR001005 -
Adu08g02390 300 SMART sant 11 61 IPR001005 -
Adu08g02390 300 PANTHER MYB TRANSCRIPTION FACTOR 1 300 - -
Adu08g02390 300 Gene3D - 11 64 - -
Adu08g02390 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 55 IPR017930 -
Adu08g02390 300 PANTHER TRANSCRIPTION FACTOR DUO1 1 300 - -
Adu08g02390 300 CDD SANT 68 107 IPR001005 -
Adu08g02390 300 CDD SANT 14 59 IPR001005 -
Adu08g02390 300 Pfam Myb-like DNA-binding domain 68 108 IPR001005 -
Adu08g02390 300 Pfam Myb-like DNA-binding domain 12 57 IPR001005 -
Adu08g02390 300 Gene3D - 68 140 - -
Adu08g02390 300 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02390 Adu-Chr8 39569533 39571847 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02390 10 296 MYB Transcription Factor Family AT3G60460 41.846 2.28e-63 200
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu08g02390 Myb_DNA-binding 3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02390 K09422 - gmx:100793689 348.977