Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02363 ATGAGTGTTGTGTATAGTCATGCTTTAAAATACTCCCAAGAAATGGATTCAAACAACATTAATTCTGGATTATTAAGGTACCGTTCTGCTCCAAGCTCAATCCTCACAAGCCTTATGGATAACATCCACCACGGCGGCGGCGGTGGCGGCAACGAAGAAGCCTTGAGAACTGAATTGGAAAAGTTGATCTCATCCAACAACAAAAGCAAACATGTTAACAATTCTTCAGAGCATTTGAAGAGAGAAGAAGGCAACAACAATTATAATTACTCTTTTGGGTCTCAGAATCATGTTATTTACCAAAACAACCAGCACTACCATCAAATTCATCAAGGGTTGGCAATGGCATCATCATGTAATAATGGTTTTGATGGAACATTTTTTGGTGCAACGAACTCAGTGGATTCAGAGAATAATAATGATAATGGCACACAACATAAAATGGGTTCCAATCTCATTAGGCAAAAGAGTTCTCCAGCTGGTTTTTTCTCCAATTATTCAATTGATAATAATGGTACAACAACATCATCAAGAAGTAACAGTGGATTGCAATGCACTTTGAACTTCTCATCAAGATCATCTTCTTGCTCCAAAAGCCGCATGCCACAAATTGTTGAGAGTGGAAATGAAGGCATGGAATCAAATTGTGTTGAAAATAGAAACCTAATAATAAGGAGTGATGATAGTAATAATAATAATAATAATAATGGCAGTACTAAGTGTTATATGCCAAGATTCACTGGTGACGTTTGGGATGCTTCTGAATTCAATTCCTCCAAAAGGGGCACTAACAATGGTGAAATCATGTTTTCCACTTCAAATGCTATGGAAGCTCAGGATGTAGATTTTGGATATCAAAAGGTTGGTTTGACCCACCATTTAAGTCTACCTAGTTCTTCTACCAAGATTGGTGGCATGGAAAAGCTTTTTCAAATTCAAGGATCTGCTCCATGTAAGATTAGAGCCAAGAGAGGATTTGCCACTCACCCAAGAAGCATTGCAGAGAGGGAAAGAAGAACAAGAATAAGTGCAAGAATCAAGAAACTACAAGACCTTTTCCCAAAATCGGACAAGCAAACAAGTACTGCAGATATGTTGGATTTGGCAGTTGATTATATCAAAGGCCTTCAAAAACAAGTCAAGATACTCACAGATACAAGGGCAAAGTGCAACTGTTCAAGTAATTATCAGAAAGAACAATGA 1203 0.3766 MSVVYSHALKYSQEMDSNNINSGLLRYRSAPSSILTSLMDNIHHGGGGGGNEEALRTELEKLISSNNKSKHVNNSSEHLKREEGNNNYNYSFGSQNHVIYQNNQHYHQIHQGLAMASSCNNGFDGTFFGATNSVDSENNNDNGTQHKMGSNLIRQKSSPAGFFSNYSIDNNGTTTSSRSNSGLQCTLNFSSRSSSCSKSRMPQIVESGNEGMESNCVENRNLIIRSDDSNNNNNNNGSTKCYMPRFTGDVWDASEFNSSKRGTNNGEIMFSTSNAMEAQDVDFGYQKVGLTHHLSLPSSSTKIGGMEKLFQIQGSAPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDLAVDYIKGLQKQVKILTDTRAKCNCSSNYQKEQ 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02363 400 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 16 396 - -
Adu08g02363 400 Gene3D - 328 398 IPR036638 GO:0046983
Adu08g02363 400 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 16 396 - -
Adu08g02363 400 Pfam Helix-loop-helix DNA-binding domain 332 377 IPR011598 GO:0046983
Adu08g02363 400 SMART finulus 332 382 IPR011598 GO:0046983
Adu08g02363 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 326 376 IPR011598 GO:0046983
Adu08g02363 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 329 392 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02363 Adu-Chr8 39239120 39242743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02363 16 382 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 35.013 1.12e-43 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu08g02363 HLH 3.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02363 - - gmx:100795896 391.349