LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu08g02352	ATGGCCACCGCCAAAAGCAACAGATTTTGCAAGTTCTATGCCCGTGGAACATGTTTGAAAGGGGAGCTGTGTTGCTTCTCCCATGAGAGAAATGAGGCTTCTTCAGATATTTGCTTGTTCTATCAGAAGGGCTACTGTGCTTATGGCAGTCAATGCAGGAATAGGCATGTCAAACCATCACAGGCATCAGCATCAGCTTCAGCAAATGGACCTGTATCTTTGGTTTCACAATCTGCCATGATTCATAGTGCTGCTAAGGGAAAGTTTACTTGGGTTCGGAAGGCGGATACGAAAGTGTTGTCACCAACTGACAAACACACTAGTAGCTTACAACACAAGAATCAACATTCTCAAGGGACTCATTGTGAAGTTGGTGAATCGAGCGCTCCTGCTATGCTGGATGAGAATTTGTTCTGTGAATTTGATGCGGCCAACTGCACCTCAAGGGATAAGTGTACCAAAATTCATGGAATCCTCTGCTTGTACTGCAGAAAGCCTTGTCTGCATCCAACCAATCTGGAACAAAGGTCGAACCACATGAAGATATGCAAGGAAAAGGCTGAGATAATGAAGAATAGTCAAGATATAGAATGCAGTGTTTGCCTGGAGCGCGTTCTGCGGAAGCCTAGACCATCTCAGCGCAAGTTTGGTTTGCTATCTGAATGTGACCATCCTTTCTGTTTAGACTGCATCATCAGGTGGCGCAATATGGCCCCAACCAATGCAATGGACTGCCCTGTGTGCCGCAAGCATTCATCTTTTTATGTTCAAAGTGACATTTGGTATGCTACAAAGGAAGAAAAACAGGCAATTATTGACAATTACAAGGCGAACTGCAAGTTGATTGATTGCAAGTATTTTAAATTTGGAACCAGGCAGTGCCCTCATGGAACTAGTTGTATGTATAAGCATGCTGTAAAACCTGTCTTGCGCAAACAGAGGCAAACCAGGCCACAACCTCAAATTGGAGGAGACAATCTCAACAAATATGACATCATGTCTCAGCTCAGTGAATTTGATTTGCATCCTCATGAGTTTTATTCCATCTTGAAAGACATGGAGTGGTTCGATGATATGAGTGCAATGGAGAAGATGGCTTTAGCTGATGAACTGGCTGGTCCTACTTACGGAGATTCACATTTCTTTCCCCAGGATGATTTCTTTGATAGTGATGATGATTTTGATGATGAAGATTTCGATCCTATTGATGCTGCAATATCATCAATGATGATGTCTGGTATGCCAGTATTTGGATTCAGTGATGACGAATACAGCAACAATGAAGCCAGGGATGGCAAAGACAGTGATGGCGAATCCATTGATGATGATTGA	1332	0.4309	MATAKSNRFCKFYARGTCLKGELCCFSHERNEASSDICLFYQKGYCAYGSQCRNRHVKPSQASASASANGPVSLVSQSAMIHSAAKGKFTWVRKADTKVLSPTDKHTSSLQHKNQHSQGTHCEVGESSAPAMLDENLFCEFDAANCTSRDKCTKIHGILCLYCRKPCLHPTNLEQRSNHMKICKEKAEIMKNSQDIECSVCLERVLRKPRPSQRKFGLLSECDHPFCLDCIIRWRNMAPTNAMDCPVCRKHSSFYVQSDIWYATKEEKQAIIDNYKANCKLIDCKYFKFGTRQCPHGTSCMYKHAVKPVLRKQRQTRPQPQIGGDNLNKYDIMSQLSEFDLHPHEFYSILKDMEWFDDMSAMEKMALADELAGPTYGDSHFFPQDDFFDSDDDFDDEDFDPIDAAISSMMMSGMPVFGFSDDEYSNNEARDGKDSDGESIDDD	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu08g02352	443	SMART	c3hfinal6	278	306	IPR000571	GO:0046872
	Adu08g02352	443	SMART	c3hfinal6	6	30	IPR000571	GO:0046872
	Adu08g02352	443	SMART	c3hfinal6	33	58	IPR000571	GO:0046872
	Adu08g02352	443	SUPERFAMILY	RING/U-box	191	255	-	-
	Adu08g02352	443	PANTHER	MAKORIN-RELATED	6	417	IPR045072	-
	Adu08g02352	443	MobiDBLite	consensus disorder prediction	420	443	-	-
	Adu08g02352	443	Pfam	Zinc finger, C3HC4 type (RING finger)	198	248	IPR018957	GO:0046872
	Adu08g02352	443	ProSiteProfiles	Zinc finger RING-type profile.	198	249	IPR001841	-
	Adu08g02352	443	MobiDBLite	consensus disorder prediction	102	122	-	-
	Adu08g02352	443	ProSiteProfiles	Zinc finger C3H1-type profile.	278	307	IPR000571	GO:0046872
	Adu08g02352	443	ProSiteProfiles	Zinc finger C3H1-type profile.	4	31	IPR000571	GO:0046872
	Adu08g02352	443	ProSitePatterns	Zinc finger RING-type signature.	222	231	IPR017907	-
	Adu08g02352	443	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	181	268	IPR013083	-
	Adu08g02352	443	ProSiteProfiles	Zinc finger C3H1-type profile.	32	59	IPR000571	GO:0046872
	Adu08g02352	443	SMART	ring_2	198	248	IPR001841	-
	Adu08g02352	443	PANTHER	MAKORIN RING-ZINC-FINGER PROTEIN	6	417	-	-
	Adu08g02352	443	Gene3D	-	2	72	-	-
	Adu08g02352	443	SUPERFAMILY	CCCH zinc finger	5	29	IPR036855	GO:0046872

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu08g02352	Adu-Chr8	39090906	39094634	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C3H	Adu08g02352		zf-C3HC4	7.8e-07	CL0229

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu08g02352	K15687		-	gmx:100788886	394.815