Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02342 ATGAGGAAACCGGATAATAATATGGGGAAGGACAAAATGGGAAATAGCAACACTATTATTAAGAGCAAGCTTAGAAAGGGTTTGTGGTCACCTGAGGAAGATGAGAAGCTATTAAGGTACATGCTCACCAGTGGACAAGGTTGTTGGACCGACATTGCGCAACGGTGCGGCAAGAGTTGCCGCCTCCGTTGGATTAACTACCTAAGGCCGGACCTTAAGCGCGGCGCTTTTTCGCCGCAAGAAGAAGATCTCATTGTTCATTTACATTCCATTCTTGGCAACAGGTGGTCTCAGATAGCAGCACGTTTACCTGGGCGTACAGACAATGAGATAAAGAATTTCTGGAACTCCACACTCAAGAAAAGATTCAAACTCAGCACCAATAACACCCCTTCACCAAACAACAACAATAGTAGCAGTGATGACTCTTCATCAGATCCTAATAATGCTAATGGAATCATGATGGTGCACCTCAATGAACAACATCATGATCTCATGCCCATGTCAATGTGCATGGACTCATCATATTCTTCATCTTCAACTTCTTCATCAATCTCATCCATGCATCAACAACAAGCAGCACCAATGGTTTTTTCTGACCCATTTTCTATCTTGATAAATAATAATAATAATGATGTGCCTCAATGCTTGATGACCCAATTTGGTGGCATGGTAGAGGAGGGGCATAATGGGAATTATGGAATTATCGGGTCTAACAATAAAATAGGGCTAGAAAGAGAGTTGTCCCTTCCTCCACTAGAAAGTGACAATAATGCCCCTATTATTGATGTGAAAAACCATAACAACCATTTCAATCATCATCATCATAGTAGTTGCTTCAATAATGCTAATCATCAAATTCATCAGAAGGTTTCCAAGGTGGAGGAATTGTTCGGGTTTGGAAATAATAACAATAGTGATCATCATGGGCATCAGCAATTGCATCAAGGGGAAAACTTGAAAATTGGAGAATGGGATTTGGAGGATAATTTCAAAATTTCTTTTCTACCCTTTTCCCTCTCTTTCTTTCATTCTCTCTCTTTCTATTTTTTTTTTTATCCCTTCTTTAATTTGTTTCTAAAAATATTATGA 1092 0.3929 MRKPDNNMGKDKMGNSNTIIKSKLRKGLWSPEEDEKLLRYMLTSGQGCWTDIAQRCGKSCRLRWINYLRPDLKRGAFSPQEEDLIVHLHSILGNRWSQIAARLPGRTDNEIKNFWNSTLKKRFKLSTNNTPSPNNNNSSSDDSSSDPNNANGIMMVHLNEQHHDLMPMSMCMDSSYSSSSTSSSISSMHQQQAAPMVFSDPFSILINNNNNDVPQCLMTQFGGMVEEGHNGNYGIIGSNNKIGLERELSLPPLESDNNAPIIDVKNHNNHFNHHHHSSCFNNANHQIHQKVSKVEELFGFGNNNNSDHHGHQQLHQGENLKIGEWDLEDNFKISFLPFSLSFFHSLSFYFFFYPFFNLFLKIL 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02342 363 Gene3D - 23 74 - -
Adu08g02342 363 Gene3D - 75 149 - -
Adu08g02342 363 CDD SANT 29 68 IPR001005 -
Adu08g02342 363 MobiDBLite consensus disorder prediction 125 152 - -
Adu08g02342 363 CDD SANT 76 119 IPR001005 -
Adu08g02342 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 69 123 IPR017930 -
Adu08g02342 363 PANTHER MYB DOMAIN PROTEIN 55 1 337 - -
Adu08g02342 363 SMART sant 25 70 IPR001005 -
Adu08g02342 363 SMART sant 73 121 IPR001005 -
Adu08g02342 363 ProSiteProfiles Myb-like domain profile. 21 68 IPR001005 -
Adu08g02342 363 Pfam Myb-like DNA-binding domain 74 118 IPR001005 -
Adu08g02342 363 Pfam Myb-like DNA-binding domain 26 68 IPR001005 -
Adu08g02342 363 PANTHER TRANSCRIPTION FACTOR MYB83 1 337 - -
Adu08g02342 363 ProSiteProfiles Myb-like domain profile. 69 119 IPR001005 -
Adu08g02342 363 SUPERFAMILY Homeodomain-like 24 115 IPR009057 -
Adu08g02342 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 68 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02342 Adu-Chr8 38934617 38939024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02342 1 340 MYB Transcription Factor Family AT3G08500 44.744 1.45e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu08g02342 Myb_DNA-binding 1.4e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02342 K09422 - gmx:100784755 288.5