Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02330 ATGTACATTAAGGAGGTTTGCTTGGAAGGTTTCAAATCATATGCGACGCGAACCGTTGTTCCGGGTTTCGACCCGTTCTTCAATGCCATAACGGGCCTGAACGGTTCCGGCAAATCGAACATTCTCGATTCGATTTGCTTCGTGCTGGGTATCACCAATTTGCAGCAGGTTCGAGCTTCGAACCTCCAGGAGCTTGTTTACAAGCAGGGACAAGCGGGGATTACAAAAGCGACGGTGTCAATTGTTTTCGATAACTCTGATAGGAGTCGAAGCCCTCTCGGATATGAAGACCATTCCGAGATTACAGTAACAAGACAGATAGTAGTTGGAGGGAGGAACAAGTATTTGATCAATGGGAAGCTTGCACAGCCTAGTCAAGTCCAGAATCTTTTTCATTCGGTGCAGCTAAATGTTAATAATCCACATTTTCTCATAATGCAAGGGCGCATCACTAAGGTTTTAAATATGAAGCCACCAGAGATATTGTCTATGCTTGAGGAAGCTGCAGGGACGAGAATGTATGAGACCAAGAAAGAGGCTGCTCTAAAAACACTTGAAAAGAAGCAAAGTAAGGTTGATGAGATTAACAAGCTTCTTGATCAGGAGATATTGCCTGCATTGGAGAAGTTGAGAAAAGAAAGGATGCAGTATATGCAATGGGCTAATGGCAATGCTGATTTAGATAGGCTTAGAAGATTTTGTATTGCTTATGAGTTTGTTCAAGCAGAGAGGATTAAAGACAATGCTAGATCTGAGGTGGAACAAGCAAAATCAAAGATAACCGAGATTGATGAAAGTGCTAAGAAGGCTCAGGTAGAAATAAAGGAAATGGAAATAAAAATAGCTCAGTTGACTTCTGAAAAAGAGGCGAGAATGGGTGGAGAAGTGAAATCTCTCTCAGATAAAGTAGATGCACTTTCTCAGAGTCTTGTCAAGCAAACATCTGTGTTAAATAATAAGATAGACACTCTCCGAAGTGAAGAAACCAACAAGGTTAATATTGTGAAAAGTATTGAAGAACTGAAGCAATCTGTAGAAGAGAAGGCCATTGCTGTTAAAAAAGCTGAAGAGGGAGCTGCAGATCTTAAAAAGAGGGTCGATGAGCTTACTAAGAAGCTGGGTGAGCATGAGAAAGAATATCAGGGTGTTATAGCTGGCAAGAGCAGTGGGAATGAAGAGCAATGCTTAGAGGATCAACTAGGTGATGCAAAGATAGCAGTTGGGAGTGCTGAAACAGAACTGAAACAGTTGAAAACCAAAATTAGCCATTGTGAAAAGGAACTGAAAGAGAAAACTAAACAATTAAGGTCAAAGCGTGAAGAAGCTGTTTCTGTAGAAAATGAGCTTGCCGCTAGAAGAAAAGACGTGGAAAATGTTAAGATCGAATTGGAGTCTATTCCATATAAAGAAGGAGAGATGGACGCTCTGCAAAGGGATCGTGCATCTGAGGTGTCAGTTGCAAAACTCATCAAAGTAAAGGATAAGTCCACAATGACTGCCTTAGAGGTTACAGCAGGTGGAAAGTTGTTTAATGTTGTTGTTGACACAGAAGATACTGGAAAGCAGCTACTACAGAATGGCAAACTCAGAAGAAGAGTGACAATCATACCCTTGAACAAAATACAATCCTATAGTGTTCCCGCTAGAGTTCAACAAGAGGCTACTAGATTGGTGGGGAAAGAGAATGCTGAAATAGCACTTTCTTTGGTTGGTTATGAAGAAGAATTGAAGAGAGCAATGGAGTACGTTTTTGGTTCAACTTTTGTTTGCAAGACCATGGAAGCTGCAAAGGAGGTGGCATTTAATCGGAATATTCATACAACAAGTGTCACTCTTGAAGGAGATATATTTCAGCCAAGTGGCCTTTTGACTGGTGGAAGCCGAAGGGGTAGTGGTGATCTTTTGAAGCAACTGCATGATTTGGCTGAGGCTGAGTCAAAACTTTCAGTGCACCAAAGAAGGTTATTGGAGATTGAAGAAAAGATTACAAAGCTTCTCCCTCTTCAGAAAAAATTTAAAGACCTCAAAGCACAACTAGAACTTAAGTCATATGATCTTTCACTATTTCAGAGCAGAGCTGAGCAAAATGAACATCATAAGCTTGGGGAGTTGGTGAAGAAGCTTGAGCAAGAACTTGACGAAGCAAAAGTTGCAGTAAAAGAAAAACAACTTTTTTATGAAGAATGTGTCAAGACTGTTTCATCCCTTGAGAAATCAATCAAAGAACATAACAGTAGTCGAGAGGGTAGGCTGAAGGAATTAGAGAAAAAGATAAAGTCAATCAAATCCCAAGTGCAATCTTCTTTAAAAGACCTGAAGGGACACGATAATGAAAAGGAGAGACTTGTGATGGAAATGGAAGCTGTTATGAAGGAGCAAACATCCTTGGAGAATCAACTAGCTTCTTTGATAACACAGATCAGTAATCTTACATCAGAAGTAGAAGAGCAAAGTTCTGCAGTTGATTCTGCAAGGAATGATCTTGATCAAGTTCAGTCACAGCTGAACTCAGTTCGCCTGAAAATGAAGGAATGTGACAAGGAAATCAGTGGTATTATGAAGGAACAGAAAAAAATTGAAGATAAACTTAGTGAGAGTAATCTTGAAAGGAAAAGGATAGAAAATGAGGTAAAACGGATGGAGATGGAACAGAAAGACTGCTCTGTGAGAGTGGATAAATTGTTAGAGAAGCATGCTTGGATTGCTTCTGAAAAACAGTTGTTTGGTAGAAGTGGAACTGATTATGATTTTTCTTCCCGTGATCCTGGTAAAGCAAAAGATGAACTTGAAAAGCTTCAAGCTGAACAGTCTGGGCTTGAGAAACGGGTCAACAAGAAAGTAATGGCAATGTTTGAGAAGGCAGAAGACGAGTACAACGATTTAATGTCAAAGAAAAACATAATTGAGAATGACAAGTCTAAAATCAAGAAAGTGATTGAAGAGTTGGATGAAAAAAAGAAGGAGACACTAAATGTGACCTGGGTCAAAGTAAACAATGATTTTGGATCCATATTTTCTACACTACTACCGGGTACGATGGCTAAGTTAGAACCTCCAGAAGGATGCAGTTTTCTTGATGGTCTTGAGGTTCGGGTTGCATTTGGAGGTGTCTGGAAACAGTCATTGTCTGAATTAAGTGGAGGTCAGCGATCTCTACTGGCACTTTCTCTGATTCTGGCACTGCTGCTATTCAAACCTGCTCCACTATACATCCTTGATGAGGTTGATGCGGCTCTTGATTTAAGCCACACACAGAACATAGGGAGAATGATAAAGACTCATTTTCCACACTCCCAGTTTATTGTTGTTTCACTGAAGGAAGGCATGTTTAATAATGCAAATGTTCTTTTCCGGACAAAATTTGTCGACGGTGTTTCAACGGTTCAGCGAACTGTTGCTGCTAAGCAAAGCAAGTGA 3417 0.4018 MYIKEVCLEGFKSYATRTVVPGFDPFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNSDRSRSPLGYEDHSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINKLLDQEILPALEKLRKERMQYMQWANGNADLDRLRRFCIAYEFVQAERIKDNARSEVEQAKSKITEIDESAKKAQVEIKEMEIKIAQLTSEKEARMGGEVKSLSDKVDALSQSLVKQTSVLNNKIDTLRSEETNKVNIVKSIEELKQSVEEKAIAVKKAEEGAADLKKRVDELTKKLGEHEKEYQGVIAGKSSGNEEQCLEDQLGDAKIAVGSAETELKQLKTKISHCEKELKEKTKQLRSKREEAVSVENELAARRKDVENVKIELESIPYKEGEMDALQRDRASEVSVAKLIKVKDKSTMTALEVTAGGKLFNVVVDTEDTGKQLLQNGKLRRRVTIIPLNKIQSYSVPARVQQEATRLVGKENAEIALSLVGYEEELKRAMEYVFGSTFVCKTMEAAKEVAFNRNIHTTSVTLEGDIFQPSGLLTGGSRRGSGDLLKQLHDLAEAESKLSVHQRRLLEIEEKITKLLPLQKKFKDLKAQLELKSYDLSLFQSRAEQNEHHKLGELVKKLEQELDEAKVAVKEKQLFYEECVKTVSSLEKSIKEHNSSREGRLKELEKKIKSIKSQVQSSLKDLKGHDNEKERLVMEMEAVMKEQTSLENQLASLITQISNLTSEVEEQSSAVDSARNDLDQVQSQLNSVRLKMKECDKEISGIMKEQKKIEDKLSESNLERKRIENEVKRMEMEQKDCSVRVDKLLEKHAWIASEKQLFGRSGTDYDFSSRDPGKAKDELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWVKVNNDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGGVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGRMIKTHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAAKQSK 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02330 1138 Coils Coil 691 725 - -
Adu08g02330 1138 Coils Coil 856 890 - -
Adu08g02330 1138 Pfam RecF/RecN/SMC N terminal domain 2 1123 IPR003395 -
Adu08g02330 1138 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2-2 486 1136 - -
Adu08g02330 1138 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2-2 1 485 - -
Adu08g02330 1138 Coils Coil 239 287 - -
Adu08g02330 1138 Coils Coil 178 198 - -
Adu08g02330 1138 Coils Coil 641 661 - -
Adu08g02330 1138 Gene3D - 767 957 - -
Adu08g02330 1138 Gene3D - 539 629 - -
Adu08g02330 1138 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1119 IPR027417 -
Adu08g02330 1138 Coils Coil 744 848 - -
Adu08g02330 1138 Coils Coil 407 448 - -
Adu08g02330 1138 CDD ABC_SMC2_euk 1 156 IPR027120 GO:0005524|GO:0016887
Adu08g02330 1138 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2 486 1136 - -
Adu08g02330 1138 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 2 1 485 - -
Adu08g02330 1138 SUPERFAMILY Smc hinge domain 429 648 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Adu08g02330 1138 PIRSF SMC 1 395 IPR024704 GO:0005524|GO:0016887
Adu08g02330 1138 PIRSF SMC 384 1117 IPR024704 GO:0005524|GO:0016887
Adu08g02330 1138 Pfam SMC proteins Flexible Hinge Domain 486 600 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Adu08g02330 1138 Gene3D - 1 202 IPR027417 -
Adu08g02330 1138 SMART SMC_hinge_2 480 600 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Adu08g02330 1138 Coils Coil 944 988 - -
Adu08g02330 1138 Gene3D - 484 640 - -
Adu08g02330 1138 Gene3D - 958 1137 IPR027417 -
Adu08g02330 1138 Coils Coil 338 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02330 Adu-Chr8 38736335 38744999 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02330 3 170 Structural Maintenance of Chromosomes family AT5G15920 22.619 5.90e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02330 K06674 - gmx:100788674 1866.28