Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02317 ATGGGGAAGAAAAGTAAACTGAAGGAACATAGTGGCAAAGAACATTGTTCCTCGACTCTTTTTGTATCCAACCTGCCATACTCTTTTTCCAACTCCCAGCTTGAGGAGACATTCAGTGAGATTGGACCTGTCAGGCGTTGCTTCATGGTCACTCAGAAGGGTAAGGAGCAGTGCATCTACCTTCTATTTGCTGTCGAGGAAGATGCTAACCGTGCTATTGAACTGAAGAATGGTTCATCTGTTGGCGGCCGGAAAATTGCAGTGAAGCATGCAATGCCACGTCCTCCCCGTGAAGAACGACAATCGAAACCAATTCAAGTTGGTAAGACAGAAGATGACCCAAAGTCAAAAAATGATGATAAAGACAGCAAAGATTCTGGAGAAGAAAAAGCTGTTTCAATTTCAAAGGCAGAAGAGGTACAAGTTTCAAATAAACAAAGAAGCTCAAAGAGGCCCATGGAAATGAGAAAAGCAACTCTTTGTAGTGATATAGCAGATGATGGAGGTGGCTCAGAAAAGCAGAGGGTCGCCAGAACTGTTATATTTGGTAGTCTCATAAATTCCGATATGGCTGAAGATGTTCACCGTCAAGCCAAAGAGATTGGCACTGTGTGTTCTATTAAGTACCCCCTTCCAAGGAAAGATATTGAACTGCAAGGTCTCCTGCAAGATGGCTGTGCTTTGGATGCTTCAGCTGTTCTCTTTACAAGTGTAAAGTCAGCTCGAGCTGCTGTTATGGCATTACATAAAAAGGAGATCAAAGGGGGAACTGTTTGGGCACGGCAACTGGGTGGAGAGGGTTCCAAGACTCAGAAATGGAAGCTTATCATCAGAAACCTTCCTTTCAAGGCTGGTGAAAAGGAAATAAGGGATGTGTTTTCCTCTGCAGGGTATGTGTGGGACGTATTTATTCCACACAAGTCAGATACAGGGCTATCCAAGGGTTTTGGATTTGTGAAATTCACCTGCAAGCAAGATGCAGAAAATGCCATTCAAAAGTTTAATGGATCCAAATTTGCAAAACGGCTCATAGCTGTTGATTGGGCTGTTCCAAAAAAGATATTTAGTAGTGATTCAAATGCCACTGAAAAAGAACAAGAGACAAAAGATGGAGATAGTAGTGCCACTGATGACGATGTTGAGCACATTGGTGATGATAACTCTAGTGATGACGATGATAGTGATGAAGAAAACCCTAGTCCCATGGAGAAGGAAGGTGTTCCTCCTGAAGTTGATTTTGATATGGAAGTAGACATGACTAGAAAGGTTCTTAACAACTTGATTGCATCCTCCACAAAAAGAGCATCAGCGCAGAATGATTCTATGTTGCCCAAAGAAAATGAAGAGCCAGAATCAGAGTCAGACGAAGATGTAGATAATAAAGGAAATAATGAGTCCGAAAAAGTTTCAGGTGTTTCTAATCCTGAAATTTCCAACATAAGCAATTTATCAAATCCTAAGCAAACAGAAGATGTTGATTTGCAGCGAACAGTTTTCATAAATAATCTTCCTTTTGATTGTGATAATGAGGAAGTGAAGGAACGGTTCTCTGGATTTGGGGAAGTAGAATACTTTGTTCCAGTTTTACACCAAGTCACCAAACGTCCAAGAGGAACTGGTTTTCTTAAGTTTAAAACCACAGAAGCAGCTAATGATGCAATTAAAGCATCAAATGCTGCTTCAGGTATTCTGCTGAAAGGTAGACCATTGAAAGTTTTGAAGGCTCTGGATAAGAAATCAGCCCATAGCAAGGAACTCGAGAAGGCAAAGAATGAGGTTAATGATCATCGCAATCTTTACCTGGCAAAGGAAGGACTCATCCTGGAGGGAACTCCAGCAGCTGAAGGGGTTTCGGCCAGTGATATGTTAAAACGCCAACAGTTAGAAAAGAAAAAGAAGACAAAGCTTCAGTCACCAAATTTTCATGTTTCAAGAACAAGACTTATCATCTACAATGTACCGAAGTCAATGTCTGAAAAAGAACTAAAGAAAGTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTGATTCGGCAGATAAAGTTCTTGAAAGATGCTAAGAAAGGAGGAAAGGTTGTCCATGAACATTTTTCACGTGGAGTTGCGTTTGTTGAGTTTTCAGAGCATCAACATGCCCTTGTGGCTCTGAGAGTTCTAAACAATAATCCTGAAACTTTTGGTCCTGAACACCGGCCAATTGTGGAGTTCGCTCTTGATAATGTTCAAACACTGAAACTCCGGAAGACAAGGCTACAATTCCAAAAGCAAGCCTCTCGTGATGACATCGAAGCTAGTGAAAATGGTGTATCCAGCAAAAACGAAGTTGACACACATGTGAAGGACAGGAAACGGAAAACTCGGGAGAGTGGCAAACCAATGAATGATTTGGATAGAAATGGTGAATCAGGTGTTACAGTGGCAAATGGAAACACCCCAGAAGGACACAAATTCAAGAAACAGAAAGGCAAAAAAAGTAGAAAGGCTGAAGAATTACCAGAGAAAGAGAATTTGGATGCCTTGGCCATGAAACCAAAGAAAAACCAAGATGGCCGGAGCCGTGGTCGTGCACAACTTGAAGGTCAAAACCCTTCCATTGACACCAAGAAAGCAACATCAGGAAACAAGGTAGATGTTGGATCAAGAAAAAGGAAGATGCAAAACGAACAAGGAGACCAAAAGGTTTCTAAGAAACGTCCAAAAAAGAATAAACAATCAGTTGGAAAAGACGCGGTAGACAAGCTTGACATGCTTATAGAACAATATAGATCGAAGTTCTCACACAAACGTTCCGAAGGGAATGACGGTGACAAAAAACCATCCAAACAGCTTAGAAAGTGGTTTGATGTATAA 2862 0.4123 MGKKSKLKEHSGKEHCSSTLFVSNLPYSFSNSQLEETFSEIGPVRRCFMVTQKGKEQCIYLLFAVEEDANRAIELKNGSSVGGRKIAVKHAMPRPPREERQSKPIQVGKTEDDPKSKNDDKDSKDSGEEKAVSISKAEEVQVSNKQRSSKRPMEMRKATLCSDIADDGGGSEKQRVARTVIFGSLINSDMAEDVHRQAKEIGTVCSIKYPLPRKDIELQGLLQDGCALDASAVLFTSVKSARAAVMALHKKEIKGGTVWARQLGGEGSKTQKWKLIIRNLPFKAGEKEIRDVFSSAGYVWDVFIPHKSDTGLSKGFGFVKFTCKQDAENAIQKFNGSKFAKRLIAVDWAVPKKIFSSDSNATEKEQETKDGDSSATDDDVEHIGDDNSSDDDDSDEENPSPMEKEGVPPEVDFDMEVDMTRKVLNNLIASSTKRASAQNDSMLPKENEEPESESDEDVDNKGNNESEKVSGVSNPEISNISNLSNPKQTEDVDLQRTVFINNLPFDCDNEEVKERFSGFGEVEYFVPVLHQVTKRPRGTGFLKFKTTEAANDAIKASNAASGILLKGRPLKVLKALDKKSAHSKELEKAKNEVNDHRNLYLAKEGLILEGTPAAEGVSASDMLKRQQLEKKKKTKLQSPNFHVSRTRLIIYNVPKSMSEKELKKVCIDAVISRATKQKPVIRQIKFLKDAKKGGKVVHEHFSRGVAFVEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKTRLQFQKQASRDDIEASENGVSSKNEVDTHVKDRKRKTRESGKPMNDLDRNGESGVTVANGNTPEGHKFKKQKGKKSRKAEELPEKENLDALAMKPKKNQDGRSRGRAQLEGQNPSIDTKKATSGNKVDVGSRKRKMQNEQGDQKVSKKRPKKNKQSVGKDAVDKLDMLIEQYRSKFSHKRSEGNDGDKKPSKQLRKWFDV 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02317 953 MobiDBLite consensus disorder prediction 757 799 - -
Adu08g02317 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 496 577 IPR000504 GO:0003723
Adu08g02317 953 SUPERFAMILY RNA-binding domain, RBD 18 259 IPR035979 GO:0003676
Adu08g02317 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 646 760 IPR000504 GO:0003723
Adu08g02317 953 SUPERFAMILY RNA-binding domain, RBD 269 354 IPR035979 GO:0003676
Adu08g02317 953 MobiDBLite consensus disorder prediction 828 857 - -
Adu08g02317 953 Gene3D - 645 741 IPR012677 -
Adu08g02317 953 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 498 558 IPR000504 GO:0003723
Adu08g02317 953 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 275 344 IPR000504 GO:0003723
Adu08g02317 953 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 86 IPR000504 GO:0003723
Adu08g02317 953 MobiDBLite consensus disorder prediction 383 399 - -
Adu08g02317 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 273 351 IPR000504 GO:0003723
Adu08g02317 953 CDD RRM2_RBM28_like 274 350 - -
Adu08g02317 953 SMART rrm1_1 497 573 IPR000504 GO:0003723
Adu08g02317 953 SMART rrm1_1 19 89 IPR000504 GO:0003723
Adu08g02317 953 SMART rrm1_1 647 739 IPR000504 GO:0003723
Adu08g02317 953 SMART rrm1_1 274 347 IPR000504 GO:0003723
Adu08g02317 953 MobiDBLite consensus disorder prediction 879 899 - -
Adu08g02317 953 CDD RRM3_RBM28_like 496 575 - -
Adu08g02317 953 SUPERFAMILY RNA-binding domain, RBD 496 725 IPR035979 GO:0003676
Adu08g02317 953 CDD RRM1_RBM28_like 19 94 - -
Adu08g02317 953 MobiDBLite consensus disorder prediction 358 382 - -
Adu08g02317 953 MobiDBLite consensus disorder prediction 757 953 - -
Adu08g02317 953 Gene3D - 429 591 IPR012677 -
Adu08g02317 953 Gene3D - 2 105 IPR012677 -
Adu08g02317 953 MobiDBLite consensus disorder prediction 858 878 - -
Adu08g02317 953 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 93 IPR000504 GO:0003723
Adu08g02317 953 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 11 379 - -
Adu08g02317 953 MobiDBLite consensus disorder prediction 358 411 - -
Adu08g02317 953 Coils Coil 572 599 - -
Adu08g02317 953 PANTHER RNA BINDING PROTEIN 11 379 - -
Adu08g02317 953 MobiDBLite consensus disorder prediction 430 489 - -
Adu08g02317 953 MobiDBLite consensus disorder prediction 465 489 - -
Adu08g02317 953 MobiDBLite consensus disorder prediction 84 156 - -
Adu08g02317 953 MobiDBLite consensus disorder prediction 91 135 - -
Adu08g02317 953 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 496 759 - -
Adu08g02317 953 Gene3D - 260 385 IPR012677 -
Adu08g02317 953 MobiDBLite consensus disorder prediction 908 953 - -
Adu08g02317 953 PANTHER RNA BINDING PROTEIN 496 759 - -
Adu08g02317 953 CDD RRM4_RBM28_like 646 744 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02317 Adu-Chr8 38512217 38519246 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02317 277 352 Eukaryotic Initiation Factors Gene Family AT3G11400 35.526 1.39e-10 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02317 K14573 - gmx:100794821 1301.19