Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02238 ATGGCTAGAAAGAAGTCAAAGCTTGAATACATAGCAAACAACTCCAAGAGAAGGGCAACATTTAGGGCAAGGAAAACTAGTTTGATAAAAAAGATTGATGAGATTAGCACCCTCTGTGGGGTTCAATCTTGTGCTATAATCTACCCTCCAAATGAACCTCAGCCAGAGGTTTGGCCATCACCTCAGAAGGCCAAACAAGTGATCTCCAAGTTTAAGGAAATTCCCAAATTGGAACAAAACAAGAGAATGTTAACCCAAGAAAGTTTGTTAAGGAAAAGAATCCAAAAGGCCGAAGACCAGCTAAAGAAACAAAAGGATGAAAATAGGCAGAAAGAGATGAGCCATCTAATGTTTCAGTGTCTGAGCTCTGGTGAGGTCACTAGTAATGCTAGCTTGATTGATCTTTGTGATCTCTCACGTTTAATTGATCAAACTCTAAAGGAAATTGACCTGAAGATTGAAAGGATCCATGATCAAGAAAAGATGGCAAATCAAGTTGAAGCTACACAAACCCAACCTTGA 522 0.3927 MARKKSKLEYIANNSKRRATFRARKTSLIKKIDEISTLCGVQSCAIIYPPNEPQPEVWPSPQKAKQVISKFKEIPKLEQNKRMLTQESLLRKRIQKAEDQLKKQKDENRQKEMSHLMFQCLSSGEVTSNASLIDLCDLSRLIDQTLKEIDLKIERIHDQEKMANQVEATQTQP 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02238 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Adu08g02238 173 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 168 - -
Adu08g02238 173 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Adu08g02238 173 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 168 - -
Adu08g02238 173 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Adu08g02238 173 Gene3D - 13 120 IPR036879 GO:0003677|GO:0046983
Adu08g02238 173 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
Adu08g02238 173 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Adu08g02238 173 Coils Coil 80 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02238 Adu-Chr8 37422104 37422625 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02238 1 154 Type I MADS-box Gene Family AT5G48670 46.104 1.04e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Adu08g02238 SRF-TF 5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02238 - - adu:107462715 341.273