Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02227 ATGGCATCAAGTAATCCATTCTTTGACGATATAAGGACCAAAACTGAAGTTGATCCCCCTCAAAATGAGGAGGCAACAGATGTTAGTGAATTAGTAAATGATCCTGCCCTAACTGCTCTCAAACCTAATGGGACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGTCCTGTATGCTTGAATGCAATGTACCCTCCAATCCATCAGTGTTCAAATGGCCACACGATATGCTCAGGTTGCAAACCAAGGGTCCACAATCGGTGCCCTACTTGTAGGCATGAACTTGGCAACATCAGATGTTTAGCACTAGAGAAGGTGGCTGCATCTTTGGAACTTCCTTGTAAATATCAAGGTTTTGGGTGCATTGGTATCTATCCATATTATAGCAAGCTGAAACACGAATCCCAGTGTGCATATAGACCATATAACTGTCCATATGCTGGTTCAGAATGCTCAGCGATGGGTGATATACCCTACTTGGTGGCCCATTTGAAAGATGATCACAAAGTGGACATGCACAATGGTAGCACTTTTAACCATCGTTATGTAAAATCAAATCCACAAGAGGTTGAAAATGCCACATGGATGCTCACGGTTTTCAGCTGCTTTGGTCAGTATTTTTGTCTACACTTTGAAGCTTTTCAGCTAGGAATGGCTCCTGTCTACATAGCCTTTTTGCGATTTATGGGTGATGATAACGAGGCAAAGAATTATAGCTACAGTCTAGAAGTGGGTGGAAATGGGAGGAAAATGATTTGGCAGGGTGTTCCTAGAAGCATTAGGGACAGCCATCGCAAGGTTCGTGACAGTTTTGACGGTCTCATAATTCAGAGGAATATGGCTCTATTCTTCTCTGGCGGCGACAGGAAAGAATTAAAGCTAAGGGTTACCGGTAGGATCTGGAAAGAACAGTGA 915 0.4306 MASSNPFFDDIRTKTEVDPPQNEEATDVSELVNDPALTALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCIGIYPYYSKLKHESQCAYRPYNCPYAGSECSAMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGMAPVYIAFLRFMGDDNEAKNYSYSLEVGGNGRKMIWQGVPRSIRDSHRKVRDSFDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02227 304 SUPERFAMILY TRAF domain-like 109 301 - -
Adu08g02227 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Adu08g02227 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 9 304 - -
Adu08g02227 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 108 IPR013083 -
Adu08g02227 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Adu08g02227 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 297 IPR008974 GO:0005515
Adu08g02227 304 CDD RING-HC_SIAHs 54 92 - -
Adu08g02227 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Adu08g02227 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Adu08g02227 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 9 304 - -
Adu08g02227 304 SUPERFAMILY RING/U-box 48 96 - -
Adu08g02227 304 MobiDBLite consensus disorder prediction 1 27 - -
Adu08g02227 304 CDD Sina 170 298 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02227 Adu-Chr8 37284852 37288686 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02227 47 304 C3H Transcription Factor Family AT2G41980 79.070 4.25e-160 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02227 K04506 - gmx:100793457 628.632