Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Adu08g02225 | ATGAGATCTACAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCGGGCGTTCATAGAAGCTTAGGAGTCCACATAACAAAGGTTCTATCGTTGAAGCTCGATGATTGGACAGAAGAAGAAGTTGATACATTGCTCAATTTTGGAGGAAACACAACACTAAACAAGAAGTATGAAGCTTGCCTCCCACCTAACATTAAAAAACCAGACCCAAATTCATCAATTGAGGAACGCTCTGACTATATAAGGCGAAAGTATGAGTTGTTGCAATTTACTGGTGGTGACAACAAATCACAACCTTGTCAAGCAAGTAATTCATCACCGCCGGTTCAAAGTGATTCTCCTTCATTCAGTGATTCTCCGATGGACAAGAAGCAACACGAAAAACATAAACATCGAATTGGGAATGCATTGCGACATAACTGGGGAAAGAAAGATCATGAGAATAAAGCTCCAAAGAAAACCAACTCATCATTGGCAGGTATGGTTGAATTTGTTGGATTAATTAAGGTTAATGTGGTAAAAGGCACTAACTTGGTTGTTCGAGATGTAGTGTCTAGTGACCCTTATGTTGTCCTTTCTTTGGGTGACCAATCAGTAAAAACACGTGTCATAAAGAAGAGTTTGAATCCAGTGTGGAATGAGAGCCTAATGTTGTCAATTCCAGAAAACATTCCTCCCCTTAAAGTGTGTGTATATGATAAGGACAAATTTTCAAACGATGATTTTATGGGTGAGGCTGAAATAGACATTGAACCTCTAGTGATAGCTACAAAAGAATATGAGGAGTCTAAAAGCTATGAGCATATGCAACAACAACATGGGGGATGTGGTTCAATCACAGAAAACACTTCCATTTGTGAAGATGATGCTAATGCCAATCACAAAGGAGAGATGAAACAACATTTTCTCAATTAG | 915 | 0.3847 | MRSTSLGVFICIKCSGVHRSLGVHITKVLSLKLDDWTEEEVDTLLNFGGNTTLNKKYEACLPPNIKKPDPNSSIEERSDYIRRKYELLQFTGGDNKSQPCQASNSSPPVQSDSPSFSDSPMDKKQHEKHKHRIGNALRHNWGKKDHENKAPKKTNSSLAGMVEFVGLIKVNVVKGTNLVVRDVVSSDPYVVLSLGDQSVKTRVIKKSLNPVWNESLMLSIPENIPPLKVCVYDKDKFSNDDFMGEAEIDIEPLVIATKEYEESKSYEHMQQQHGGCGSITENTSICEDDANANHKGEMKQHFLN | 304 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Adu08g02225 | 304 | MobiDBLite | consensus disorder prediction | 92 | 118 | - | - | |
| Adu08g02225 | 304 | PANTHER | ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12 | 3 | 272 | IPR044518 | GO:0005096|GO:0005543 | |
| Adu08g02225 | 304 | SUPERFAMILY | ArfGap/RecO-like zinc finger | 3 | 91 | IPR037278 | - | |
| Adu08g02225 | 304 | SMART | arf_gap_3 | 1 | 98 | IPR001164 | GO:0005096 | |
| Adu08g02225 | 304 | SUPERFAMILY | C2 domain (Calcium/lipid-binding domain, CaLB) | 163 | 260 | IPR035892 | - | |
| Adu08g02225 | 304 | Gene3D | C2 domain | 164 | 301 | IPR035892 | - | |
| Adu08g02225 | 304 | ProSiteProfiles | C2 domain profile. | 149 | 264 | IPR000008 | - | |
| Adu08g02225 | 304 | SMART | C2_3c | 167 | 262 | IPR000008 | - | |
| Adu08g02225 | 304 | Gene3D | Arf GTPase activating protein | 1 | 98 | IPR038508 | - | |
| Adu08g02225 | 304 | Pfam | C2 domain | 167 | 256 | IPR000008 | - | |
| Adu08g02225 | 304 | PANTHER | CALCIUM-DEPENDENT ARF-TYPE GTPASE ACTIVATING FAMILY PROTEIN | 3 | 272 | - | - | |
| Adu08g02225 | 304 | CDD | ArfGap | 3 | 85 | - | - | |
| Adu08g02225 | 304 | MobiDBLite | consensus disorder prediction | 92 | 154 | - | - | |
| Adu08g02225 | 304 | MobiDBLite | consensus disorder prediction | 138 | 152 | - | - | |
| Adu08g02225 | 304 | ProSiteProfiles | ARF GTPase-activating proteins domain profile. | 1 | 98 | IPR001164 | GO:0005096 | |
| Adu08g02225 | 304 | Pfam | Putative GTPase activating protein for Arf | 3 | 91 | IPR001164 | GO:0005096 | |
| Adu08g02225 | 304 | PRINTS | HIV Rev interacting protein signature | 28 | 49 | IPR001164 | GO:0005096 | |
| Adu08g02225 | 304 | PRINTS | HIV Rev interacting protein signature | 7 | 24 | IPR001164 | GO:0005096 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Adu08g02225 | Adu-Chr8 | 37250509 | 37254393 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Adu08g02225 | 3 | 270 | C2H2 Transcription Factor Family | AT4G21160 | 44.776 | 9.22e-77 | 236 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Adu08g02225 | K12486 | - | gmx:100789552 | 373.629 |