Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02212 ATGAAAATCCCATCAATGCCATCATCACCCTCCTTCTCCTTTGTTCTACTCTTCCTTTTATTCCTCATTGTACCATTACTACAAGCCCAACAACAATCTCCATCAAAAAACGCCCCTCCTCCTCCCCCTTCATTGCCTCCGCCTGCTTCGGCTCAAAAACATTTTCCTCCTCCACCTCCACCTTCTTCTTTGACTCGAAAAGTTGCTCCACCTCCTCCTCCTCCTTCACTGCCTCCACCTCCAACTTCTTCTCCACCTCCTCCTTATTTTCCACGAAAATATGCTCCTCCTTCTCCACCTTCCTCTTCTTCTCCGGCTCCAATGCTTACCCCTCCTTCTCCGTCTTCAAAACACTCCCCTCCTCCGTCTCCACTACCACCTTCTACCTCTTCAGCTCCAGCATCTCCTCCTCCTCCTCCTTCCTCCAAAGAAGCCTGCAAGTCTACACTGTACCCAAAACTCTGCCGCTCCATTCTAAAATCCATTCGCTCGTCACCATCCGATCCATACAACTTAGGGAAATTCTCCATCAAACAAAGCCTCAAAAAAGTCAAGAAGCTAGCAAAAGCGTTCGATGACTTCCTCCACCACAAGTCGACTTCTTACCTCAACCAAGCCGAGATCTCGGCTCTCGACGACTGCCGCGACCTCAACCAACTCAACGTAGACTACCTCCAAACCGTCTCCGACAACCTCAAATCTGCGACCTCGTTAGACAGCAATGGAAATGAGGAATTGGTGGAGGACATCGAAACGTATCTGAGTGCGGTGGCTACTAACCACTACACTTGCTATGATGGGTTGGTGGCGGCGAAGAGTAACATCGCAGATGCGCTGGCGGTGCCTCTGAACGATGTGAAGCAACTGTATAGTGTGTCGCTTGGGTTGGTTACGGAGGCTCTGAACAAGAATAGGAAGAAGCATAAGACAAGAAAGCATGGTCTCCCTACTAATGACTACAAAGTTAGACAGCCTCTCAAGAAGCTCATTAAGTTTCTTCACACAACAAGTAATAGTTGCAAAGAATCATCATTCAATTGTACAAGGAAAAGCGAAAGGATTCTTGAAGAAAGCAATAACAGCAAAGGAATTCTACTGAACAGCTATGTGATTGTGAGCATTGATGGGACAGGGAACTTCACTTCCATTGGAGACGCCATTGCTTTTGCTCCGAACAATTCAAGAGCAGAAGATGGGTATTTCCTTATCTATGTCACAGAAGGGTGCTACGAGGAATATGTCACTATCCCCAAACAAAAGACTAACATTTTGCTTGTTGGAGATGGTATCAATAAGACTGTCATCACAGGGAATCATAGTGTCATTGATGGTTGGACAACTTTCAATTCTTCAACTTTTGCTGTTTCTGGAGATAGATTCATGGCAGTAGATATTACATTCAGAAACACAGCTGGCCCTGAGAAGCACCAAGCAGTAGCACTTAGAAGCAACGCTGACCTCTCCACCTTCTACCGATGCAGTTTTGAAGGATATCAAGACACACTCTACGTTCACTCTCTAAGACAATTTTACAGAGAATGTGACATCTATGGAACGGTAGACTTCATCTTTGGTAACGCCGCCGTAGTTTTCCAGAGCTGCAACATCTATGCAAGAAAGCCAATGACTAACCAGAAAAACTCCGTCACGGCGCAAGGCCGGACGGATCCAAACCAAAACACCGGAATCTCAATCCAAAATTGCACCATCCAGGCCGCCCCTGACTTGGCGGCCGACGTGGAATCCACGCCGAATTACTTAGGTAGGCCGTGGAAAGAGTACTCGAGGACGGTTTATATGCAGTCATATATTGGTGCCTTGATTAACCCTTCTGGATGGTTAGAGTGGAATGGGACCGTTGGGTTAGACACACTCTTCTATGGTGAATTTAATAACTATGGTCCTGGTGCTGGTACAAGTAACAGAGTAAAATGGAAGGGTTACAACTTGTTGAATGCTACTCAAGCTTGGAATTTTACTGTTCTTAATTTTACTTTGGGAGATACATGGCTTCCTTACACTGATATACCATACACTGCAGGCCTAGAAGATTAA 2055 0.4594 MKIPSMPSSPSFSFVLLFLLFLIVPLLQAQQQSPSKNAPPPPPSLPPPASAQKHFPPPPPPSSLTRKVAPPPPPPSLPPPPTSSPPPPYFPRKYAPPSPPSSSSPAPMLTPPSPSSKHSPPPSPLPPSTSSAPASPPPPPSSKEACKSTLYPKLCRSILKSIRSSPSDPYNLGKFSIKQSLKKVKKLAKAFDDFLHHKSTSYLNQAEISALDDCRDLNQLNVDYLQTVSDNLKSATSLDSNGNEELVEDIETYLSAVATNHYTCYDGLVAAKSNIADALAVPLNDVKQLYSVSLGLVTEALNKNRKKHKTRKHGLPTNDYKVRQPLKKLIKFLHTTSNSCKESSFNCTRKSERILEESNNSKGILLNSYVIVSIDGTGNFTSIGDAIAFAPNNSRAEDGYFLIYVTEGCYEEYVTIPKQKTNILLVGDGINKTVITGNHSVIDGWTTFNSSTFAVSGDRFMAVDITFRNTAGPEKHQAVALRSNADLSTFYRCSFEGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQSCNIYARKPMTNQKNSVTAQGRTDPNQNTGISIQNCTIQAAPDLAADVESTPNYLGRPWKEYSRTVYMQSYIGALINPSGWLEWNGTVGLDTLFYGEFNNYGPGAGTSNRVKWKGYNLLNATQAWNFTVLNFTLGDTWLPYTDIPYTAGLED 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02212 684 SMART PMEI_2 137 296 IPR006501 GO:0004857
Adu08g02212 684 SUPERFAMILY Pectin lyase-like 367 681 IPR011050 -
Adu08g02212 684 CDD PMEI-like_3 145 299 - -
Adu08g02212 684 Pfam Pectinesterase 370 667 IPR000070 GO:0030599|GO:0042545
Adu08g02212 684 Pfam Plant invertase/pectin methylesterase inhibitor 143 295 IPR006501 GO:0004857
Adu08g02212 684 PANTHER PECTINESTERASE 135 682 - -
Adu08g02212 684 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 144 298 IPR035513 -
Adu08g02212 684 MobiDBLite consensus disorder prediction 29 147 - -
Adu08g02212 684 TIGRFAM PME_inhib: pectinesterase inhibitor domain 143 298 IPR006501 GO:0004857
Adu08g02212 684 Gene3D - 367 684 IPR012334 -
Adu08g02212 684 Gene3D Invertase/pectin methylesterase inhibitor family protein 143 300 IPR035513 -
Adu08g02212 684 MobiDBLite consensus disorder prediction 35 143 - -
Adu08g02212 684 ProSitePatterns Pectinesterase signature 2. 516 525 IPR033131 -
Adu08g02212 684 PANTHER PECTINESTERASE 135 682 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02212 Adu-Chr8 36983819 36988616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02212 113 682 Carbohydrate Esterase AT3G10720 57.239 0.0 683
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02212 K01051 - gmx:100776781 835.099