Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02085 ATGACAGACCCACATTATTCCAATCTATACGCTTCATCAGGAAGGTTCAACTTCATGCCCCTCCACCCTCATTACTTCCCTTCTTCCTCCTCCTCCTCCTCTTCTTCTTCTTTTATTTCTAATCAAAATTCCATTAATACTTCCCTCTTCTCATCACCATCGTATCCTCTCTATTTCTCAAACACCAGATTATTCTCCTTCCAATTGGAACCACCCTCTTCATCATCTTCTTCTCCTCCTCCTTCTTCCCCTCCTCTCATACAAGCCCTTCCTTTCATAAACACCAACAGCAGTGATCAAGAAGTAGTGGTGGACAAGATGAGAAAAGACAACAACAAAAAAGATGAAGAGAATCTTTTGGCTGATGATGATTATGATGATAACGAAGGTGTTGCCGTAGCGCTACGAATAGGGCTTCCTAATAGCGTGTCTGATAATACTTCCGGTATTGATGATCGGCAAAAGAAGAAGAAGATCTCATCAAACACAGAAGAAATTGTGGGAGAAAAAGATGAAGTGATGAGCGTGGTTTCTGAGCATCAGCCTTTGTTGTTAGAGAGATTGAACAATAACAAGACACAGTTTCAGTATTGGATTCCCACAGCTTCTCAGATTCTCATTGGTCCTACTCAGTTCTCATGCCCAGTCTGCTCCAAGACTTTCAACCGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGACCAGATTCTCTAAAAGGAACACAACCAACAGCAATGCTAAGGCTTCCATGCTTCTGTTGTGCGCCAGGTTGCAAGCACAATATAGACCACCCAAGAGCGAGGCCTCTCAAGGACTTCAGAACCCTCCAAACGCATTACAAGCGAAAGCACGGCGTAAAACCCTACGCTTGCCGGAAATGTGGCAAGCCGTTCGCCGTGAAAGGCGATTGGCGGACGCATGAGAAGAACTGCGGCAGGATCTGGTATTGTTTGTGTGGGTCTGATTTCAAGCATAAGAGGTCCCTGAAGGATCATGTCAAAGCCTTTGGCCATGGACATGGTGCTTTTGGTATTGATTGCATGCAAGAGGAGGATGAAGCAGCTTCCGAAGTTGAACATGATGGTGATTGCTCCTTGTAG 1122 0.4456 MTDPHYSNLYASSGRFNFMPLHPHYFPSSSSSSSSSSFISNQNSINTSLFSSPSYPLYFSNTRLFSFQLEPPSSSSSSPPPSSPPLIQALPFINTNSSDQEVVVDKMRKDNNKKDEENLLADDDYDDNEGVAVALRIGLPNSVSDNTSGIDDRQKKKKISSNTEEIVGEKDEVMSVVSEHQPLLLERLNNNKTQFQYWIPTASQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCFCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGVKPYACRKCGKPFAVKGDWRTHEKNCGRIWYCLCGSDFKHKRSLKDHVKAFGHGHGAFGIDCMQEEDEAASEVEHDGDCSL 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02085 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 212 239 IPR013087 -
Adu08g02085 373 SUPERFAMILY beta-beta-alpha zinc fingers 281 316 IPR036236 -
Adu08g02085 373 PANTHER ZINC FINGER PROTEIN WIP2 36 367 IPR043584 GO:0003700|GO:0010468
Adu08g02085 373 PANTHER ZINC FINGER PROTEIN WIP2 36 367 - -
Adu08g02085 373 SMART c2h2final6 212 234 IPR013087 -
Adu08g02085 373 SMART c2h2final6 322 345 IPR013087 -
Adu08g02085 373 SMART c2h2final6 296 316 IPR013087 -
Adu08g02085 373 MobiDBLite consensus disorder prediction 69 90 - -
Adu08g02085 373 Gene3D Classic Zinc Finger 211 234 - -
Adu08g02085 373 Gene3D Classic Zinc Finger 275 349 - -
Adu08g02085 373 SUPERFAMILY beta-beta-alpha zinc fingers 205 234 IPR036236 -
Adu08g02085 373 ProSitePatterns Zinc finger C2H2 type domain signature. 214 234 IPR013087 -
Adu08g02085 373 Pfam Zinc finger, C2H2 type 212 231 IPR013087 -
Adu08g02085 373 ProSiteProfiles Zinc finger C2H2 type domain profile. 296 316 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02085 Adu-Chr8 34794665 34799280 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02085 131 366 C2H2 Transcription Factor Family AT3G57670 64.567 1.91e-117 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Adu08g02085 zf-C2H2 0.00066 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02085 - - ahf:112707475 711.835