Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02071 ATGAGTGTTATGTATAGTCCTGTTCTCAAATACTCACATGGAGTTCTAAGAAAAGGCCATGAAATGATTTCAAATATTAACCATCATCAGCATCAGGATCAAAATCATCATCATCAACAACAACAGCAGCAAAATTCTAGATTATTGAGGTACCGTTCTGCTCCAAGTTCATTCTTGGAAAACCTTGTTGATATTAACAATGGTGGTGCTAGTGTCAATGAGGACCCTCCTCTGGGACATGGTTGTTACCATCATATTCCATCCACAAGCTCATCATCAGAGGCCATGTTTTCCAAGCCGATACAATCAAACAATGGATGGAGCCGCCGCGATTCGGAACCTGTGCAAGTCCAAGAAGAGTATGGAGGAAGCAACAACAAGCCTACTGTGTTGAAGGAGGAAAATGGGAATTCTTCTTTCTTAAAGGAACAAAATGGTTACCCTTATTGGACTCAGCAAATTCAAAGTTTGCCAACAAATAATAATGGTTATGATGGCTCTTTTGGTGTAGTGAACTCTGTCAATTCAGATCACTCTACTCAATCTGAAATGGGTGTTAGGAGTTGCTCCAATCTCATCAGGCAAAAGAGTTCTCCAGCTGGATTTTTCTCCAGTGAAAATGCATTGAGAGAGGTTGAGAGGTTTAGATCCAATGATGTCTCATCTAATAGGTCATCCTCTTGCTTGAAAAGGATGCCACAGATTGCCGAATACGAAAACGAAAGTCATGAAGGAAACCTGGTAAATGATAATGGCAGCTCTAAGTACTATGTGCCTAGCTTCACCGGTGAAGTTTGGGACGCCTCTTCATTCAATTCCCAAAAAGCAGCAAGTGCAGATGAAATCATGTTCTCCGCTTCAACTGCTTTGGAATCTCAGGATTCAGATTTCTGCTCACAAAATCTTGGTTTGATTCATCATTTGAGTCTGCTTAGTTCTTCTACTAAGATGGGATCTATGGAGAAGTTTCTTCAACTCCAAGGAACCGTTCCATGCAAAATTCGAGCCAAAAGAGGCTTTGCTACTCACCCTAGAAGCATTGCAGAGAGGGTACGAAGAACACGAATTAGCGAAAGAATCAAGAAATTGCAAGGCCTTTTCCCGAAATCGGACAAGCAAACAAGCACAGCAGAGATGCTGGATTTGGCTGTTGAGCACATTAAAGAACTGCAGGAACAAGTTAAGATGCTCACAAATATTAGGTCAAAGTGTAGATGTACAAATACTCAGAAGCAATATTCTTGA 1245 0.4096 MSVMYSPVLKYSHGVLRKGHEMISNINHHQHQDQNHHHQQQQQQNSRLLRYRSAPSSFLENLVDINNGGASVNEDPPLGHGCYHHIPSTSSSSEAMFSKPIQSNNGWSRRDSEPVQVQEEYGGSNNKPTVLKEENGNSSFLKEQNGYPYWTQQIQSLPTNNNGYDGSFGVVNSVNSDHSTQSEMGVRSCSNLIRQKSSPAGFFSSENALREVERFRSNDVSSNRSSSCLKRMPQIAEYENESHEGNLVNDNGSSKYYVPSFTGEVWDASSFNSQKAASADEIMFSASTALESQDSDFCSQNLGLIHHLSLLSSSTKMGSMEKFLQLQGTVPCKIRAKRGFATHPRSIAERVRRTRISERIKKLQGLFPKSDKQTSTAEMLDLAVEHIKELQEQVKMLTNIRSKCRCTNTQKQYS 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02071 414 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 340 390 IPR011598 GO:0046983
Adu08g02071 414 MobiDBLite consensus disorder prediction 29 48 - -
Adu08g02071 414 CDD bHLH_AtbHLH_like 345 397 IPR045239 -
Adu08g02071 414 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 342 407 IPR036638 GO:0046983
Adu08g02071 414 Pfam Helix-loop-helix DNA-binding domain 345 391 IPR011598 GO:0046983
Adu08g02071 414 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 37 410 - -
Adu08g02071 414 Coils Coil 380 400 - -
Adu08g02071 414 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 37 410 - -
Adu08g02071 414 Gene3D - 342 412 IPR036638 GO:0046983
Adu08g02071 414 SMART finulus 346 396 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02071 Adu-Chr8 34603343 34605970 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02071 30 408 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 34.568 6.95e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Adu08g02071 HLH 2.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02071 - - adu:107462676 774.237