Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02058 ATGGGTCGCCCACCCAGCAATGGAGGCCCTGCCTTTCGCTTCACTTCATCTGAGGTTGCAGAAATGGAAACTATTTTGCATGAGCACAATAATGCAATGCCGGCACGCGATGTTCTTGCTGCTATTGCAGAGAAGTTCAGTGAATCACCGGGTCGTTGTAAAGACAAGATTACTGTTCAGATGAGACAAGTGTGGAATTGGTTTCAAAATAAGCGATATGCTATAAGGGCAAAATTAAACAAGTCTCTAGTAAAGTTAGATATCACACCAATGACCAAGGCCAGTTCAGCCGTGGTAAAGAATATTCATCAACCAACAGCCGCTACAATTCCAACTGCTTCAGGAAAAGTTACTCAAGAAAGCTCAGCCACGGAATTTGAAGCTAAATCTGGAAGGGATAGAGCATGGTATGACGTTGCTAACTTTATAATGCACAGATATTTGGAGAGCGGTGATCCGGAAGTGCTGGTAAGATTTTCTGGTTTTGGACCTGCGGAAGATGAGTGGGTAAATGTCCGAAAGAATGTCAGGCCACGCTCTCTGCCATGTGAATCAGCAGAATGTGTTGCAGTCCTTCCTGGGGATCTTATACTATGTTTTCAGGAAGGTAAAGAACAGGCCCTTTATTTTGATGCCCATGTACTTGATGCTCAAAGGCGGAGGCATGATGTAAGAGGTTGCCGTTGTAGATTTTTGGTTCGTTATGATCATGATCAGTCAGAGGAAATTGTGCAACTTAGGAAGATTTGTCGCAGGCCGGAAACCGATTTCAGGTTACAACAGCTTCATGCCGTGCCGGAGATGAAGAGTGGCATCGATCCAGCACCTGTTCATGCTGTCAGGGTTACTACTTCGGCCGAATCACAGAAACAACAGAATGCAAACACTCCAATGTCAACATTAGCACAAAGTATAAGTAAAGTCGAAACATCTAGTGATGTTACGGCAGGAAGCGTGTTCCCGGTCAGTGCTGCTACATTCGCAACCAACGTTGCTTCAAGCAGTGTTCATGGTGCCTCTAGTCACAGCATGGCCGAAGGAAAATAA 1047 0.4508 MGRPPSNGGPAFRFTSSEVAEMETILHEHNNAMPARDVLAAIAEKFSESPGRCKDKITVQMRQVWNWFQNKRYAIRAKLNKSLVKLDITPMTKASSAVVKNIHQPTAATIPTASGKVTQESSATEFEAKSGRDRAWYDVANFIMHRYLESGDPEVLVRFSGFGPAEDEWVNVRKNVRPRSLPCESAECVAVLPGDLILCFQEGKEQALYFDAHVLDAQRRRHDVRGCRCRFLVRYDHDQSEEIVQLRKICRRPETDFRLQQLHAVPEMKSGIDPAPVHAVRVTTSAESQKQQNANTPMSTLAQSISKVETSSDVTAGSVFPVSAATFATNVASSSVHGASSHSMAEGK 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02058 348 Pfam SAWADEE domain 124 250 IPR032001 GO:0003682
Adu08g02058 348 ProSiteProfiles 'Homeobox' domain profile. 13 78 IPR001356 GO:0003677
Adu08g02058 348 CDD homeodomain 13 76 IPR001356 GO:0003677
Adu08g02058 348 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 324 - -
Adu08g02058 348 Gene3D - 10 85 - -
Adu08g02058 348 SUPERFAMILY Homeodomain-like 4 78 IPR009057 -
Adu08g02058 348 SMART HOX_1 7 82 IPR001356 GO:0003677
Adu08g02058 348 Gene3D - 183 255 - -
Adu08g02058 348 Gene3D - 121 182 - -
Adu08g02058 348 PANTHER PROTEIN SAWADEE HOMEODOMAIN HOMOLOG 2 1 324 IPR039276 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02058 Adu-Chr8 34419299 34423621 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Adu08g02058 SAWADEE 2e-39 CL0049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02058 - - aip:107630217 443.736