Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g02037 ATGGAGGCCAGGATGAGGAGAACAACAGTTGAGAAGATGAGGAAGGATAGCACAGTTGATGAGGTAGAAGAGGAGTTAGAAGAGGAAGATGAGAGTGGTGTTGGTGATGGTGTCCTTGCAGAAGAAGAGAAGAAGAAAAGTGCTGTTGGAAGTGGGAGAAGAGGATCAAATGGGGCAGGAGGAGTTTCTCCACCCTCCTGCCAGGCTGAGAGGTGTGGCGCCGACTTGACCGAGGCAAAAAGGTACCACCGCCGCCATAAGGTGTGTGAGTTTCATTCCAAGGCACCTGTGGTGGTGGTTGCAGGGATGAGGCAGAGGTTTTGCCAGCAATGTAGCAGGTTCCATGACCTGGCAGAATTTGATGAAGCCAAAAGAAGCTGCCGCAGGCGCTTGGCCGGACACAATGAGAGACGCCGGAAGAGCAACATAGAGCCTTGCAACGAGGGAAGCGGCCGAGGCGGCAAAGGGCAACCCCCTAAGGAAAGCCACTGCAGAAACGCCGACGATCGGGGAAGAACTCAGATGAACATTTCAGGGAGCTCTGGCTACAAGTCCTTCCATATGGTTCCTTGCATTCCAAGGCATATAATAAGAAAAAGAAAAACCCCCTTTTTTCTATGTTAG 624 0.516 MEARMRRTTVEKMRKDSTVDEVEEELEEEDESGVGDGVLAEEEKKKSAVGSGRRGSNGAGGVSPPSCQAERCGADLTEAKRYHRRHKVCEFHSKAPVVVVAGMRQRFCQQCSRFHDLAEFDEAKRSCRRRLAGHNERRRKSNIEPCNEGSGRGGKGQPPKESHCRNADDRGRTQMNISGSSGYKSFHMVPCIPRHIIRKRKTPFFLC 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g02037 207 Pfam SBP domain 67 140 IPR004333 GO:0003677
Adu08g02037 207 MobiDBLite consensus disorder prediction 132 181 - -
Adu08g02037 207 MobiDBLite consensus disorder prediction 1 20 - -
Adu08g02037 207 MobiDBLite consensus disorder prediction 1 69 - -
Adu08g02037 207 MobiDBLite consensus disorder prediction 21 36 - -
Adu08g02037 207 Coils Coil 12 32 - -
Adu08g02037 207 SUPERFAMILY SBT domain 65 144 IPR036893 GO:0003677|GO:0005634
Adu08g02037 207 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 2 187 - -
Adu08g02037 207 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 2 187 IPR044817 GO:0003677
Adu08g02037 207 ProSiteProfiles Zinc finger SBP-type profile. 64 141 IPR004333 GO:0003677
Adu08g02037 207 Gene3D - 58 128 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g02037 Adu-Chr8 34037644 34038783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g02037 52 154 SBP-box Gene Family AT1G53160 70.192 2.75e-42 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Adu08g02037 SBP 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g02037 - - aprc:113864686 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Adu08g02037 08 34037644 34038783 Adu10g00250 10 3063257 3064522 ECH
Adu08g02037 08 34037644 34038783 Adu08g02037 08 34037644 34038783 ECH