Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01935 ATGGCCAAGTCTTGTTCTAGTGAAAAGAACAATAATAATGGATTGAAGAAGGGTCCATGGACTCCGGAGGAAGATCAAAAACTCATTGATTACATTCAGAAACATGGACATGGCAAGTGGCGAACCCTTCCTAAGAATGCAGGATTAAAGAGATGTGGAAAGAGTTGCCGGCTAAGGTGGGCTAATTACTTGAGGCCTGATATAAAGAGAGGAAGATTCTCATTTGAAGAAGAAGAAATTATCATCCAGTTACACACTGTTTTGGGAAACAAGTGGTCTACAATTGCTGCTAATTTACCCGGAAGAACAGATAATGAGATTAAGAATTATTGGAACACTCACATCAAGAAGAAATTGTTGAAGATGGGGATTGATCCGATGACTCATACACCACGCCTTGATGTTTTTCAACTCTCTTCAATTCTAAGCTCAACCTTATACAATAACAATAATTCACCCCAAATTAATAATAATTATTACCCTACCCTCTTTGGTATTGGATCATCAAGTGTTGCAAATAATCCAAGCCAAGTCCTAAGTTTGCTCGCATCTCTTCTATCATATCAAAGCAGAAACAATGACAACATTTTAAATCAACAAAACCAACTTGGTACTATTAGCCCTCTATTATTGCAAAATCAAATGCACCTTAACCCTAGCCAAGCCTTCCAACCAAACCAACCTTGTGCTAATAATTTTCATGTGGAAACCCAAAACATGAAATCAAAATTAGAGCCTCAAATCCCTTCAACTTCTACCCCTTTTAGCCATCAAAATACATTACCAAATTTGTGGCACTATAATGGTGGCGGTTACATGGCTAATCAACAAGGTTTTCCTTCCTTGCTGGAAAATAATAATCAGATTTTGTGTAGTGAAGGGATTATGGCTAATTTCAATTTGATGAACTCAATGTTATCCTCTTCTACAGCTTCATCTTCTAGCCCCAGTAATTTGAATTCATCATCTTCAACAACATTTGTCAATGGGACAACAACCACCGAAGATGAAAGGGACAGTTATGGAAGCAACATGTTGATGTATAAATATAATATATCAAACGGATTGAATAACTCTGGACTTTTGTGA 1089 0.3691 MAKSCSSEKNNNNGLKKGPWTPEEDQKLIDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGRFSFEEEEIIIQLHTVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLLKMGIDPMTHTPRLDVFQLSSILSSTLYNNNNSPQINNNYYPTLFGIGSSSVANNPSQVLSLLASLLSYQSRNNDNILNQQNQLGTISPLLLQNQMHLNPSQAFQPNQPCANNFHVETQNMKSKLEPQIPSTSTPFSHQNTLPNLWHYNGGGYMANQQGFPSLLENNNQILCSEGIMANFNLMNSMLSSSTASSSSPSNLNSSSSTTFVNGTTTTEDERDSYGSNMLMYKYNISNGLNNSGLL 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01935 362 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Adu08g01935 362 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Adu08g01935 362 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Adu08g01935 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Adu08g01935 362 MobiDBLite consensus disorder prediction 310 339 - -
Adu08g01935 362 SMART sant 69 117 IPR001005 -
Adu08g01935 362 SMART sant 16 66 IPR001005 -
Adu08g01935 362 Gene3D - 72 119 - -
Adu08g01935 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 348 - -
Adu08g01935 362 CDD SANT 72 115 IPR001005 -
Adu08g01935 362 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 348 - -
Adu08g01935 362 CDD SANT 19 64 IPR001005 -
Adu08g01935 362 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Adu08g01935 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Adu08g01935 362 MobiDBLite consensus disorder prediction 1 22 - -
Adu08g01935 362 Gene3D - 16 69 - -
Adu08g01935 362 MobiDBLite consensus disorder prediction 1 17 - -
Adu08g01935 362 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01935 Adu-Chr8 32301080 32302752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01935 1 362 MYB Transcription Factor Family AT4G21440 46.277 1.28e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Adu08g01935 Myb_DNA-binding 2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01935 K09422 - gmx:100820398 398.282