Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01889 ATGAGACAAGCAGGTGCATATTCTGGGATACTATGTGGGGGCATTTCTGGAAGAACAGGGCCACACTCTTTGCCATTGGCAAGGATCAAGAAGATCATGAAAAAATCTGGTGAAGATGTTAAGATGATTTCTGGTGAGGCACCTATTGTTTTCTCAAAGGCTTGTGAGCTCTTCATTGAGGAACTTACTAGAAGGTCTTGGATCGTCGCCATCCATGGAAAGAGGAGAACCTTGCATAAAGATGACGTCGCATCCGCCGTCGTCGCCACTGATATCTTTGACTTTTTGGTCACTTTGGTGTCTCATAATCATGGATGTGCTTTGAATAATAATGCCAATAATGATGGTGCTGTTATGGAAATTCAGACATTACAGTATTCTTAA 384 0.4219 MRQAGAYSGILCGGISGRTGPHSLPLARIKKIMKKSGEDVKMISGEAPIVFSKACELFIEELTRRSWIVAIHGKRRTLHKDDVASAVVATDIFDFLVTLVSHNHGCALNNNANNDGAVMEIQTLQYS 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01889 127 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 107 - -
Adu08g01889 127 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Adu08g01889 127 SUPERFAMILY Histone-fold 16 96 IPR009072 GO:0046982
Adu08g01889 127 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 107 - -
Adu08g01889 127 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01889 Adu-Chr8 31340191 31340574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01889 22 104 CCAAT-HAP5 Transcription Factor Family AT3G48590 66.265 3.36e-33 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Adu08g01889 CBFD_NFYB_HMF 9.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01889 - - adu:107462326 246.514