Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Adu08g01882 ATGGCTTTGAGGGTGGCAGCGGCTACAGCTGCGGCGCAGCCTTCGTCGCGCGGTTTATGGCGGCNNNNCCGTTCTGCTTATCCGCCGTCGACTACTGCCGCAGTGTTTGCTCGACAGGCGGTGGAGCCCAAATCCTCCGTCTTCGTTTCCGGGCTTAACAAACGGACGACATCCGAACGCCTACTCCAAGAATTTTCTAAGTTTGGCGAAGTTGTTCGCACTAGGGTGATGATCGATAGAACAGGTTGTTCTAAAGGGTACGGCTTTGTACAATATGCCACTATAGAAGAGGCTGCAAAGGGCATCGAAAACATGAATGGAAAGTTTTTGGATGGTTGGGTTATATTTGTAGAGTATGCCAAATCTATCCCAGAATCTAGACAGCAATGTCCCCGGCATCTCCGGCAGTAG 411 0.5085 MALRVAAATAAAQPSSRGLWRXXRSAYPPSTTAAVFARQAVEPKSSVFVSGLNKRTTSERLLQEFSKFGEVVRTRVMIDRTGCSKGYGFVQYATIEEAAKGIENMNGKFLDGWVIFVEYAKSIPESRQQCPRHLRQ 136
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Adu08g01882 136 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 122 IPR000504 GO:0003723
Adu08g01882 136 PANTHER TRANSFORMER-2-RELATED 1 126 - -
Adu08g01882 136 CDD RRM_SF 47 118 - -
Adu08g01882 136 Gene3D - 30 135 IPR012677 -
Adu08g01882 136 SMART rrm1_1 46 118 IPR000504 GO:0003723
Adu08g01882 136 SMART rrm2_1 46 118 IPR003954 GO:0003676
Adu08g01882 136 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 112 IPR000504 GO:0003723
Adu08g01882 136 PANTHER GLYCINE-RICH RNA-BINDING PROTEIN 3, MITOCHONDRIAL-LIKE 1 126 - -
Adu08g01882 136 SUPERFAMILY RNA-binding domain, RBD 38 131 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Adu08g01882 Adu-Chr8 31133350 31135498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Adu08g01882 29 127 Eukaryotic Initiation Factors Gene Family AT4G34110 33.000 3.72e-07 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Adu08g01882 - - adu:107488830 176.407