LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Adu08g01857	ATGAAAATCCAACAATATTATTATATGGGTGTCATAAAGGCTAGCTTTTGCATTGTTTTGGTTCTTTATCTTGTGGGAGCAATTATTAGTCTTGAAGAAAAGAGGAAGGAAGCACAAGAAGAACTCCTTATCCAACTATTTGATCCTAAATCTGAAATTTTTGATAAAGATACGGCAGAGTTATTATGGACTACTTGCTGGGAGGATTTGATTAAAATTGAAGATGTTGATTCATGCCCCATACAATCACCAAGTAACACGAATGAAATCAGTTTAGAAAGAGGAATAATAGTTCAAAGAAACATTGAAAATGTGATTAACAATTGCCAACCGCAATTGAGGGAAGGTTTCATTGATTGCTTGAGAAGACACAATCCCCTAATCCATGTCTCAAAGAACAGTTTGCATGCAAGTTATGTGAGATTACTGTCTTCCAGAAGAAACTTGGGTCATGTTTTGCTCCAAGATGTGTCAAGAGCAGAAGATGTTGGAGATGAATCGGTGCAAACTAAAACTAAAACGGAAAACACTGCTCCAAAAGAGAGTGGAAGCGAACAAAATGTGTTTGTTATCGTAGGTATAACTGCAGTGTCATCATTTGGAATTGCAGCATTTGTTTTCATATTTTGTTGTAGATGTAGCAGAGCAACTGTTGATCAAACTGATGAGAAACCTCTTCTCAGCTTGTGTAGGACTGACTACTCCAATGGGTCCTTTAACAGTAGAAATCCTCCGCAGGAGTCAATGAAAAAAGAAGACAGCATTGAGACTCTTATGTCAAGTAAAATTTTATTTGATGACAATAAAAATAAAAACTTAGCGCATGAAATATATTCAATGCGATTAGCAGGACCGTATGAAATAAGTTCAGTAGGATTAGGAGGAGCTGATGCTTCTGCTGCCGCTTCGGCAAGACCGTCAATGGACTTGAAACCTCCTCCCGGCAGGGTTGGACCACCGTTACCTTTGAAACCTCCTCCTGGAAGGCCAAATCCTCCCTCCGACCCATCAATTCCTCCTCCTTCCGCTGATGAAAATAATCCTCCTCTTCTGCCTCCTCCTGCTGCTGATGCTCCTCCTCCTCCACCACCGCCAAAGCCGAGTAATGCTCCACCTCCTCCTGCACCGCCACCGAGTAGAGGTGGTGGTGGGCCTCCACCTCCTCCACCACCAGGTGGAAAAGGCCCTCCACCTCCCCCTCCACCAGGTGCAAAAGGCCCAGGCCCAGGCCCTCCTCCCCCACCAGCACCTAAGGGAGGAGGTGGTCCACGACCTCCTGGACCGCCTCCTCTGAAAGGTGCAATTGGCGGGAAGGCTAGGCCCCCAGGACGAGGACCCGAAGGTCCTGGAGGTGTTCCTAAGCCAAAACTTAAGCCTTTCTTCTGGGATAAGGTTCAAGCAAACTCAGATCAGGCTATGGTTTGGAATCAGCTCAAAGCAGGATCCTTCCAGTTCAATGAAGAAATGATGGAGTCGCTTTTTGGATATAATGCCGCTCAAGAAAAATCTAAACCCGGAATGAAGAAAGAATCTCGTGAACAAACTCCTCAATATATTCAGATCATTGAACCAAAGAAAGCACAGAATTTATCAATTCTGTTGAAAGCGTTGAATGTAACATTAGAAGAAGTTCGTGATGCACTCCTTGAAGGGAATGAAATACCCCCAGAATTCTTAAACACTTTGTTGAAGATGGCACCAAGTCAAGAGGAAGAACTAAAGCTCAGACTCTTCACAGGGGACCTACACATGCTTGGACCCGCTGACCGATTCTTGAAAGCCATTGTCGACATTCCATTTGCCTTCAAACGAATCGAAACACTACATTACATGTGCACTCTCTCGGATGAACTCATTACTACTAGAGATTCTTTTGGAGTTTTGGAGGTTGCATGTGAGGAACTAAAAAGCAGCAGGCTATTCCTGAAGCTTCTAGAAGCGGTGTTGAAAACAGGAAACAGGATGAACGATGGAACATTCCGAGGCGGCGCGCAAGCTTTCAAACTTGACACGCTGCTGAAGCTCTCTGATGTGAAAGGTGTAGACGGGAAAACCACGCTTCTTCACTTTGTGGTACAAGAAATAATTAGAACAGAGGGAATAAGAGCAATGAGAATGTCAAAAGAGAGCCTAAGCTTTTCGAGCATAAAAACCGACGACCTTCTAGAAGATGTCAACTTAGAGAACGAAGACCAGTACCGGGACCTCGGCCTTAACGTGGTGTCCCGTCTGAGTAGTGAGCTTGAGAATGTCAAGAAAGCAGCGGCTCTGGATGTGGACGGTTTGATATCTACGACGGCCAGACTCGGCCACGGTCTTATAAAGGCCAGAGAATTTGTAAACACGGAACTTAAGACCCTGGAGGATGACCAGGGCTACTACGAAGTCACCAAGAGCTTTGTGGAGAGTGCGGAAGAGGGCGTCGCCAACTTGCTCCGAGAAGAGAAGAAGATCATGGCATTGATAAAGAGCACAGGTGACTACTTTCATGGCAATTCTGGCAAGGATGAAGGCTTGAGGTTGTTTCCGATAGTGCGTGATTTCTTGCTAATGTTGGATAAGGTTTGCAAAGAAATAAAGACTATACCAAAGAAACCACCACCGGCAGCAGCCGCACAGGCACAAGCACAGGCAGCACCACCGGCGGCACCGGCATCAAATAATAATAATGAAAAACAGGAGAGTGGTAGTTCGAAAACTTCAACAGAGACAGGCGCTGCTCCTCCGCCTCCTCCTATTTTTCGCAACCGACTTCCGGTAGTTGCAGAAAGGACGGGTGACTTTAGTTCGGACGATGACAGTCCATAG	2808	0.453	MKIQQYYYMGVIKASFCIVLVLYLVGAIISLEEKRKEAQEELLIQLFDPKSEIFDKDTAELLWTTCWEDLIKIEDVDSCPIQSPSNTNEISLERGIIVQRNIENVINNCQPQLREGFIDCLRRHNPLIHVSKNSLHASYVRLLSSRRNLGHVLLQDVSRAEDVGDESVQTKTKTENTAPKESGSEQNVFVIVGITAVSSFGIAAFVFIFCCRCSRATVDQTDEKPLLSLCRTDYSNGSFNSRNPPQESMKKEDSIETLMSSKILFDDNKNKNLAHEIYSMRLAGPYEISSVGLGGADASAAASARPSMDLKPPPGRVGPPLPLKPPPGRPNPPSDPSIPPPSADENNPPLLPPPAADAPPPPPPPKPSNAPPPPAPPPSRGGGGPPPPPPPGGKGPPPPPPPGAKGPGPGPPPPPAPKGGGGPRPPGPPPLKGAIGGKARPPGRGPEGPGGVPKPKLKPFFWDKVQANSDQAMVWNQLKAGSFQFNEEMMESLFGYNAAQEKSKPGMKKESREQTPQYIQIIEPKKAQNLSILLKALNVTLEEVRDALLEGNEIPPEFLNTLLKMAPSQEEELKLRLFTGDLHMLGPADRFLKAIVDIPFAFKRIETLHYMCTLSDELITTRDSFGVLEVACEELKSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIIRTEGIRAMRMSKESLSFSSIKTDDLLEDVNLENEDQYRDLGLNVVSRLSSELENVKKAAALDVDGLISTTARLGHGLIKAREFVNTELKTLEDDQGYYEVTKSFVESAEEGVANLLREEKKIMALIKSTGDYFHGNSGKDEGLRLFPIVRDFLLMLDKVCKEIKTIPKKPPPAAAAQAQAQAAPPAAPASNNNNEKQESGSSKTSTETGAAPPPPPIFRNRLPVVAERTGDFSSDDDSP	935

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Adu08g01857	935	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	447	878	IPR015425	-
	Adu08g01857	935	Pfam	Formin Homology 2 Domain	453	852	IPR015425	-
	Adu08g01857	935	Gene3D	Formin, FH2 domain	452	895	IPR042201	-
	Adu08g01857	935	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	516	867	-	-
	Adu08g01857	935	MobiDBLite	consensus disorder prediction	312	432	-	-
	Adu08g01857	935	PANTHER	FORMIN-LIKE PROTEIN 3	13	136	-	-
	Adu08g01857	935	PANTHER	FORMIN-LIKE PROTEIN 3	167	343	-	-
	Adu08g01857	935	PANTHER	FORMIN-LIKE PROTEIN 3	377	878	-	-
	Adu08g01857	935	PANTHER	FORMIN-RELATED	167	343	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Adu08g01857	935	PANTHER	FORMIN-RELATED	377	878	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Adu08g01857	935	PANTHER	FORMIN-RELATED	13	136	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Adu08g01857	935	SMART	it6_source	447	867	IPR015425	-
	Adu08g01857	935	MobiDBLite	consensus disorder prediction	302	458	-	-
	Adu08g01857	935	Coils	Coil	527	547	-	-
	Adu08g01857	935	MobiDBLite	consensus disorder prediction	864	935	-	-
	Adu08g01857	935	MobiDBLite	consensus disorder prediction	880	904	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Adu08g01857	Adu-Chr8	30568075	30571941	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Adu08g01857	444	884	FH2 protein (formin) Gene Family	AT5G54650	62.640	0.0	563

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Adu08g01857	-		-	ahf:112772643	880.937

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Adu08g01857	08	30568075	30571941	Adu08g01857	08	30568075	30571941	ECH
	Adu08g01857	08	30568075	30571941	Adu03g01609	03	25893342	25898566	PCT